Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06135

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06130 and AO353_06135 are separated by 115 nucleotidesAO353_06135 and AO353_06140 are separated by 320 nucleotides AO353_06130: AO353_06130 - LysR family transcriptional regulator, at 1,367,859 to 1,368,788 _06130 AO353_06135: AO353_06135 - NADPH:quinone reductase, at 1,368,904 to 1,369,917 _06135 AO353_06140: AO353_06140 - MFS transporter, at 1,370,238 to 1,371,431 _06140 Position (kb) 1368 1369 1370Strain fitness (log2 ratio) -2 -1 0 1 2at 1367.948 kb on + strandat 1367.948 kb on + strandat 1367.948 kb on + strandat 1367.949 kb on - strandat 1367.949 kb on - strandat 1367.949 kb on - strandat 1367.952 kb on + strand, within AO353_06130at 1367.952 kb on + strand, within AO353_06130at 1367.952 kb on + strand, within AO353_06130at 1367.952 kb on + strand, within AO353_06130at 1367.952 kb on + strand, within AO353_06130at 1367.952 kb on + strand, within AO353_06130at 1367.952 kb on + strand, within AO353_06130at 1367.952 kb on + strand, within AO353_06130at 1367.952 kb on + strand, within AO353_06130at 1367.953 kb on - strand, within AO353_06130at 1367.953 kb on - strand, within AO353_06130at 1367.953 kb on - strand, within AO353_06130at 1367.953 kb on - strand, within AO353_06130at 1367.953 kb on - strand, within AO353_06130at 1367.953 kb on - strand, within AO353_06130at 1367.953 kb on - strand, within AO353_06130at 1367.953 kb on - strand, within AO353_06130at 1367.976 kb on + strand, within AO353_06130at 1367.976 kb on + strand, within AO353_06130at 1367.976 kb on + strand, within AO353_06130at 1367.976 kb on + strand, within AO353_06130at 1367.977 kb on - strand, within AO353_06130at 1367.977 kb on - strand, within AO353_06130at 1367.977 kb on - strand, within AO353_06130at 1367.977 kb on - strand, within AO353_06130at 1367.977 kb on - strand, within AO353_06130at 1368.039 kb on + strand, within AO353_06130at 1368.039 kb on + strand, within AO353_06130at 1368.039 kb on + strand, within AO353_06130at 1368.039 kb on + strand, within AO353_06130at 1368.039 kb on + strand, within AO353_06130at 1368.039 kb on + strand, within AO353_06130at 1368.040 kb on - strand, within AO353_06130at 1368.040 kb on - strand, within AO353_06130at 1368.040 kb on - strand, within AO353_06130at 1368.052 kb on - strand, within AO353_06130at 1368.070 kb on + strand, within AO353_06130at 1368.070 kb on + strand, within AO353_06130at 1368.070 kb on + strand, within AO353_06130at 1368.070 kb on + strand, within AO353_06130at 1368.070 kb on + strand, within AO353_06130at 1368.071 kb on - strand, within AO353_06130at 1368.071 kb on - strand, within AO353_06130at 1368.071 kb on - strand, within AO353_06130at 1368.071 kb on - strand, within AO353_06130at 1368.108 kb on + strand, within AO353_06130at 1368.108 kb on + strand, within AO353_06130at 1368.108 kb on + strand, within AO353_06130at 1368.108 kb on + strand, within AO353_06130at 1368.108 kb on + strand, within AO353_06130at 1368.109 kb on - strand, within AO353_06130at 1368.109 kb on - strand, within AO353_06130at 1368.109 kb on - strand, within AO353_06130at 1368.109 kb on - strand, within AO353_06130at 1368.109 kb on - strand, within AO353_06130at 1368.109 kb on - strand, within AO353_06130at 1368.109 kb on - strand, within AO353_06130at 1368.109 kb on - strand, within AO353_06130at 1368.109 kb on - strand, within AO353_06130at 1368.109 kb on - strand, within AO353_06130at 1368.211 kb on + strand, within AO353_06130at 1368.211 kb on + strand, within AO353_06130at 1368.211 kb on + strand, within AO353_06130at 1368.211 kb on + strand, within AO353_06130at 1368.211 kb on + strand, within AO353_06130at 1368.211 kb on + strand, within AO353_06130at 1368.211 kb on + strand, within AO353_06130at 1368.211 kb on + strand, within AO353_06130at 1368.211 kb on + strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.212 kb on - strand, within AO353_06130at 1368.274 kb on + strand, within AO353_06130at 1368.274 kb on + strand, within AO353_06130at 1368.275 kb on - strand, within AO353_06130at 1368.275 kb on - strand, within AO353_06130at 1368.420 kb on + strand, within AO353_06130at 1368.510 kb on + strand, within AO353_06130at 1368.510 kb on + strand, within AO353_06130at 1368.510 kb on + strand, within AO353_06130at 1368.511 kb on - strand, within AO353_06130at 1368.511 kb on - strand, within AO353_06130at 1368.586 kb on + strand, within AO353_06130at 1368.586 kb on + strand, within AO353_06130at 1368.586 kb on + strand, within AO353_06130at 1368.587 kb on - strand, within AO353_06130at 1368.587 kb on - strand, within AO353_06130at 1368.587 kb on - strand, within AO353_06130at 1368.587 kb on - strand, within AO353_06130at 1368.587 kb on - strand, within AO353_06130at 1368.824 kb on + strandat 1368.824 kb on + strandat 1368.824 kb on + strandat 1368.825 kb on - strandat 1368.845 kb on + strandat 1368.845 kb on + strandat 1368.884 kb on + strandat 1368.884 kb on + strandat 1368.884 kb on + strandat 1368.884 kb on + strandat 1368.885 kb on - strandat 1368.919 kb on + strandat 1368.919 kb on + strandat 1368.919 kb on + strandat 1368.920 kb on - strandat 1369.165 kb on + strand, within AO353_06135at 1369.165 kb on + strand, within AO353_06135at 1369.165 kb on + strand, within AO353_06135at 1369.165 kb on + strand, within AO353_06135at 1369.166 kb on - strand, within AO353_06135at 1369.166 kb on - strand, within AO353_06135at 1369.166 kb on - strand, within AO353_06135at 1369.166 kb on - strand, within AO353_06135at 1369.166 kb on - strand, within AO353_06135at 1369.168 kb on + strand, within AO353_06135at 1369.169 kb on - strand, within AO353_06135at 1369.169 kb on - strand, within AO353_06135at 1369.239 kb on + strand, within AO353_06135at 1369.240 kb on - strand, within AO353_06135at 1369.714 kb on + strand, within AO353_06135at 1369.714 kb on + strand, within AO353_06135at 1369.714 kb on + strand, within AO353_06135at 1369.715 kb on - strand, within AO353_06135at 1369.715 kb on - strand, within AO353_06135at 1369.715 kb on - strand, within AO353_06135at 1369.715 kb on - strand, within AO353_06135at 1369.715 kb on - strand, within AO353_06135at 1369.915 kb on + strandat 1369.915 kb on + strandat 1369.915 kb on + strandat 1369.915 kb on + strandat 1369.915 kb on + strandat 1369.916 kb on - strandat 1369.916 kb on - strandat 1369.916 kb on - strandat 1369.916 kb on - strandat 1369.916 kb on - strandat 1369.916 kb on - strandat 1369.916 kb on - strandat 1369.916 kb on - strandat 1369.916 kb on - strandat 1369.923 kb on + strandat 1369.923 kb on + strandat 1369.923 kb on + strandat 1369.924 kb on - strandat 1369.924 kb on - strandat 1370.018 kb on + strandat 1370.018 kb on + strandat 1370.079 kb on + strandat 1370.080 kb on - strandat 1370.080 kb on - strandat 1370.080 kb on - strandat 1370.080 kb on - strandat 1370.164 kb on + strandat 1370.164 kb on + strandat 1370.304 kb on + strandat 1370.304 kb on + strandat 1370.305 kb on - strandat 1370.305 kb on - strandat 1370.307 kb on + strandat 1370.307 kb on + strandat 1370.307 kb on + strandat 1370.307 kb on + strandat 1370.307 kb on + strandat 1370.307 kb on + strandat 1370.307 kb on + strandat 1370.308 kb on - strandat 1370.308 kb on - strandat 1370.308 kb on - strandat 1370.308 kb on - strandat 1370.308 kb on - strandat 1370.308 kb on - strandat 1370.308 kb on - strandat 1370.308 kb on - strandat 1370.502 kb on - strand, within AO353_06140at 1370.543 kb on + strand, within AO353_06140at 1370.587 kb on + strand, within AO353_06140at 1370.587 kb on + strand, within AO353_06140at 1370.588 kb on - strand, within AO353_06140at 1370.588 kb on - strand, within AO353_06140at 1370.588 kb on - strand, within AO353_06140at 1370.722 kb on + strand, within AO353_06140at 1370.722 kb on + strand, within AO353_06140at 1370.723 kb on - strand, within AO353_06140at 1370.723 kb on - strand, within AO353_06140at 1370.723 kb on - strand, within AO353_06140at 1370.758 kb on + strand, within AO353_06140at 1370.758 kb on + strand, within AO353_06140at 1370.758 kb on + strand, within AO353_06140at 1370.758 kb on + strand, within AO353_06140at 1370.758 kb on + strand, within AO353_06140at 1370.758 kb on + strand, within AO353_06140at 1370.759 kb on - strand, within AO353_06140at 1370.836 kb on + strand, within AO353_06140at 1370.837 kb on - strand, within AO353_06140at 1370.837 kb on - strand, within AO353_06140

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,367,948 + -0.0
1,367,948 + +0.1
1,367,948 + -1.0
1,367,949 - +1.7
1,367,949 - -0.0
1,367,949 - +1.0
1,367,952 + AO353_06130 0.10 -1.0
1,367,952 + AO353_06130 0.10 -0.3
1,367,952 + AO353_06130 0.10 +0.1
1,367,952 + AO353_06130 0.10 -0.3
1,367,952 + AO353_06130 0.10 +1.3
1,367,952 + AO353_06130 0.10 -0.0
1,367,952 + AO353_06130 0.10 -1.7
1,367,952 + AO353_06130 0.10 -0.7
1,367,952 + AO353_06130 0.10 +0.0
1,367,953 - AO353_06130 0.10 +0.8
1,367,953 - AO353_06130 0.10 +1.3
1,367,953 - AO353_06130 0.10 -2.1
1,367,953 - AO353_06130 0.10 +0.2
1,367,953 - AO353_06130 0.10 +1.9
1,367,953 - AO353_06130 0.10 -0.7
1,367,953 - AO353_06130 0.10 -2.1
1,367,953 - AO353_06130 0.10 -1.4
1,367,976 + AO353_06130 0.13 -2.0
1,367,976 + AO353_06130 0.13 +0.3
1,367,976 + AO353_06130 0.13 -1.1
1,367,976 + AO353_06130 0.13 +0.7
1,367,977 - AO353_06130 0.13 -0.5
1,367,977 - AO353_06130 0.13 +0.3
1,367,977 - AO353_06130 0.13 -0.3
1,367,977 - AO353_06130 0.13 +0.2
1,367,977 - AO353_06130 0.13 -0.1
1,368,039 + AO353_06130 0.19 +0.9
1,368,039 + AO353_06130 0.19 +0.4
1,368,039 + AO353_06130 0.19 +0.5
1,368,039 + AO353_06130 0.19 +0.7
1,368,039 + AO353_06130 0.19 +1.5
1,368,039 + AO353_06130 0.19 +1.6
1,368,040 - AO353_06130 0.19 -0.3
1,368,040 - AO353_06130 0.19 -0.9
1,368,040 - AO353_06130 0.19 -0.0
1,368,052 - AO353_06130 0.21 +0.2
1,368,070 + AO353_06130 0.23 +1.6
1,368,070 + AO353_06130 0.23 -0.4
1,368,070 + AO353_06130 0.23 -1.5
1,368,070 + AO353_06130 0.23 +0.7
1,368,070 + AO353_06130 0.23 +2.3
1,368,071 - AO353_06130 0.23 -0.0
1,368,071 - AO353_06130 0.23 -0.6
1,368,071 - AO353_06130 0.23 -0.7
1,368,071 - AO353_06130 0.23 +1.5
1,368,108 + AO353_06130 0.27 +0.7
1,368,108 + AO353_06130 0.27 -0.2
1,368,108 + AO353_06130 0.27 -0.0
1,368,108 + AO353_06130 0.27 -0.1
1,368,108 + AO353_06130 0.27 +1.0
1,368,109 - AO353_06130 0.27 -0.3
1,368,109 - AO353_06130 0.27 +0.7
1,368,109 - AO353_06130 0.27 -1.0
1,368,109 - AO353_06130 0.27 -0.7
1,368,109 - AO353_06130 0.27 -0.4
1,368,109 - AO353_06130 0.27 -0.3
1,368,109 - AO353_06130 0.27 +1.1
1,368,109 - AO353_06130 0.27 -1.1
1,368,109 - AO353_06130 0.27 -1.1
1,368,109 - AO353_06130 0.27 +0.9
1,368,211 + AO353_06130 0.38 -0.3
1,368,211 + AO353_06130 0.38 +0.3
1,368,211 + AO353_06130 0.38 -1.6
1,368,211 + AO353_06130 0.38 -0.3
1,368,211 + AO353_06130 0.38 -1.4
1,368,211 + AO353_06130 0.38 -0.3
1,368,211 + AO353_06130 0.38 +0.3
1,368,211 + AO353_06130 0.38 -1.1
1,368,211 + AO353_06130 0.38 +1.1
1,368,212 - AO353_06130 0.38 +0.1
1,368,212 - AO353_06130 0.38 -0.3
1,368,212 - AO353_06130 0.38 +1.6
1,368,212 - AO353_06130 0.38 -0.8
1,368,212 - AO353_06130 0.38 -1.5
1,368,212 - AO353_06130 0.38 +0.7
1,368,212 - AO353_06130 0.38 +1.1
1,368,212 - AO353_06130 0.38 +0.7
1,368,212 - AO353_06130 0.38 +0.9
1,368,212 - AO353_06130 0.38 -0.9
1,368,212 - AO353_06130 0.38 -0.9
1,368,212 - AO353_06130 0.38 +2.0
1,368,212 - AO353_06130 0.38 +0.2
1,368,212 - AO353_06130 0.38 -0.3
1,368,212 - AO353_06130 0.38 +1.3
1,368,274 + AO353_06130 0.45 +1.5
1,368,274 + AO353_06130 0.45 +1.3
1,368,275 - AO353_06130 0.45 +0.4
1,368,275 - AO353_06130 0.45 +0.5
1,368,420 + AO353_06130 0.60 +1.7
1,368,510 + AO353_06130 0.70 -0.0
1,368,510 + AO353_06130 0.70 +2.3
1,368,510 + AO353_06130 0.70 -1.0
1,368,511 - AO353_06130 0.70 +0.2
1,368,511 - AO353_06130 0.70 +0.4
1,368,586 + AO353_06130 0.78 +0.3
1,368,586 + AO353_06130 0.78 +0.6
1,368,586 + AO353_06130 0.78 -0.0
1,368,587 - AO353_06130 0.78 -2.1
1,368,587 - AO353_06130 0.78 -0.0
1,368,587 - AO353_06130 0.78 +0.3
1,368,587 - AO353_06130 0.78 -0.1
1,368,587 - AO353_06130 0.78 -0.3
1,368,824 + -1.5
1,368,824 + -0.0
1,368,824 + -0.5
1,368,825 - +0.7
1,368,845 + -0.0
1,368,845 + +0.9
1,368,884 + -2.0
1,368,884 + +0.7
1,368,884 + +0.6
1,368,884 + +0.6
1,368,885 - +0.1
1,368,919 + -0.2
1,368,919 + +0.1
1,368,919 + -0.1
1,368,920 - +0.2
1,369,165 + AO353_06135 0.26 -0.8
1,369,165 + AO353_06135 0.26 -0.4
1,369,165 + AO353_06135 0.26 -2.4
1,369,165 + AO353_06135 0.26 +0.9
1,369,166 - AO353_06135 0.26 +2.2
1,369,166 - AO353_06135 0.26 +1.5
1,369,166 - AO353_06135 0.26 -2.4
1,369,166 - AO353_06135 0.26 +1.7
1,369,166 - AO353_06135 0.26 +0.3
1,369,168 + AO353_06135 0.26 +0.9
1,369,169 - AO353_06135 0.26 -0.0
1,369,169 - AO353_06135 0.26 +1.3
1,369,239 + AO353_06135 0.33 +0.2
1,369,240 - AO353_06135 0.33 -0.3
1,369,714 + AO353_06135 0.80 +1.0
1,369,714 + AO353_06135 0.80 -1.0
1,369,714 + AO353_06135 0.80 +0.3
1,369,715 - AO353_06135 0.80 -0.0
1,369,715 - AO353_06135 0.80 +0.5
1,369,715 - AO353_06135 0.80 -0.7
1,369,715 - AO353_06135 0.80 +1.0
1,369,715 - AO353_06135 0.80 -0.8
1,369,915 + +0.4
1,369,915 + -0.5
1,369,915 + +0.9
1,369,915 + -0.2
1,369,915 + -0.1
1,369,916 - -1.1
1,369,916 - +0.7
1,369,916 - -1.4
1,369,916 - -0.8
1,369,916 - +0.3
1,369,916 - -1.1
1,369,916 - +0.4
1,369,916 - +0.9
1,369,916 - +2.1
1,369,923 + +0.1
1,369,923 + -0.9
1,369,923 + -0.1
1,369,924 - +0.3
1,369,924 - -1.3
1,370,018 + +0.2
1,370,018 + -1.4
1,370,079 + -1.4
1,370,080 - -0.3
1,370,080 - +1.9
1,370,080 - -1.6
1,370,080 - -0.7
1,370,164 + +1.3
1,370,164 + -0.0
1,370,304 + -0.1
1,370,304 + -0.9
1,370,305 - -1.5
1,370,305 - +1.1
1,370,307 + +1.1
1,370,307 + -0.5
1,370,307 + -0.9
1,370,307 + +0.4
1,370,307 + +0.8
1,370,307 + -0.0
1,370,307 + +0.5
1,370,308 - +0.8
1,370,308 - +0.1
1,370,308 - +0.2
1,370,308 - -0.5
1,370,308 - +0.2
1,370,308 - -0.0
1,370,308 - -1.7
1,370,308 - +0.5
1,370,502 - AO353_06140 0.22 +0.1
1,370,543 + AO353_06140 0.26 -2.4
1,370,587 + AO353_06140 0.29 -0.7
1,370,587 + AO353_06140 0.29 +1.1
1,370,588 - AO353_06140 0.29 +0.5
1,370,588 - AO353_06140 0.29 -2.6
1,370,588 - AO353_06140 0.29 +0.3
1,370,722 + AO353_06140 0.41 -1.3
1,370,722 + AO353_06140 0.41 +0.4
1,370,723 - AO353_06140 0.41 -0.7
1,370,723 - AO353_06140 0.41 -0.3
1,370,723 - AO353_06140 0.41 -0.0
1,370,758 + AO353_06140 0.44 +1.9
1,370,758 + AO353_06140 0.44 -0.2
1,370,758 + AO353_06140 0.44 +0.3
1,370,758 + AO353_06140 0.44 +0.2
1,370,758 + AO353_06140 0.44 -0.3
1,370,758 + AO353_06140 0.44 +1.4
1,370,759 - AO353_06140 0.44 +0.8
1,370,836 + AO353_06140 0.50 -0.4
1,370,837 - AO353_06140 0.50 -2.3
1,370,837 - AO353_06140 0.50 -1.4

Or see this region's nucleotide sequence