Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4619 and Pf6N2E2_4620 are separated by 0 nucleotides Pf6N2E2_4620 and Pf6N2E2_4621 overlap by 1 nucleotides Pf6N2E2_4621 and Pf6N2E2_4622 overlap by 8 nucleotides
Pf6N2E2_4619 - Malonate decarboxylase alpha subunit, at 5,349,122 to 5,350,792
_4619
Pf6N2E2_4620 - Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25), at 5,350,793 to 5,351,668
_4620
Pf6N2E2_4621 - Malonate decarboxylase delta subunit, at 5,351,668 to 5,351,967
_4621
Pf6N2E2_4622 - Malonate decarboxylase beta subunit, at 5,351,960 to 5,352,811
_4622
Position (kb) 5350
5351
5352 Strain fitness (log2 ratio) -1
0
1 at 5349.867 kb on - strand, within Pf6N2E2_4619 at 5349.944 kb on + strand, within Pf6N2E2_4619 at 5349.944 kb on + strand, within Pf6N2E2_4619 at 5349.945 kb on - strand, within Pf6N2E2_4619 at 5350.082 kb on + strand, within Pf6N2E2_4619 at 5350.083 kb on - strand, within Pf6N2E2_4619 at 5350.083 kb on - strand, within Pf6N2E2_4619 at 5350.169 kb on + strand, within Pf6N2E2_4619 at 5350.169 kb on + strand, within Pf6N2E2_4619 at 5350.490 kb on + strand, within Pf6N2E2_4619 at 5350.535 kb on + strand, within Pf6N2E2_4619 at 5350.535 kb on + strand, within Pf6N2E2_4619 at 5350.536 kb on - strand, within Pf6N2E2_4619 at 5350.536 kb on - strand, within Pf6N2E2_4619 at 5350.541 kb on + strand, within Pf6N2E2_4619 at 5350.541 kb on + strand, within Pf6N2E2_4619 at 5350.541 kb on + strand, within Pf6N2E2_4619 at 5350.541 kb on + strand, within Pf6N2E2_4619 at 5350.542 kb on - strand, within Pf6N2E2_4619 at 5350.542 kb on - strand, within Pf6N2E2_4619 at 5350.542 kb on - strand, within Pf6N2E2_4619 at 5350.542 kb on - strand, within Pf6N2E2_4619 at 5350.760 kb on + strand at 5350.761 kb on - strand at 5350.761 kb on - strand at 5350.761 kb on - strand at 5350.761 kb on - strand at 5350.761 kb on - strand at 5350.761 kb on - strand at 5350.761 kb on - strand at 5350.790 kb on + strand at 5350.790 kb on + strand at 5350.791 kb on - strand at 5351.276 kb on + strand, within Pf6N2E2_4620 at 5351.284 kb on - strand, within Pf6N2E2_4620 at 5351.445 kb on - strand, within Pf6N2E2_4620 at 5351.445 kb on - strand, within Pf6N2E2_4620 at 5351.630 kb on - strand at 5351.678 kb on + strand at 5351.678 kb on + strand at 5351.679 kb on - strand at 5351.679 kb on - strand at 5352.046 kb on + strand, within Pf6N2E2_4622 at 5352.046 kb on + strand, within Pf6N2E2_4622 at 5352.047 kb on - strand, within Pf6N2E2_4622 at 5352.047 kb on - strand, within Pf6N2E2_4622 at 5352.047 kb on - strand, within Pf6N2E2_4622 at 5352.396 kb on - strand, within Pf6N2E2_4622 at 5352.396 kb on - strand, within Pf6N2E2_4622 at 5352.473 kb on + strand, within Pf6N2E2_4622 at 5352.551 kb on + strand, within Pf6N2E2_4622 at 5352.629 kb on + strand at 5352.629 kb on + strand, within Pf6N2E2_4622 at 5352.630 kb on - strand, within Pf6N2E2_4622 at 5352.630 kb on - strand, within Pf6N2E2_4622 at 5352.630 kb on - strand, within Pf6N2E2_4622 at 5352.630 kb on - strand, within Pf6N2E2_4622
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 5,349,867 - Pf6N2E2_4619 0.45 -0.0 5,349,944 + Pf6N2E2_4619 0.49 +1.0 5,349,944 + Pf6N2E2_4619 0.49 +0.1 5,349,945 - Pf6N2E2_4619 0.49 -0.2 5,350,082 + Pf6N2E2_4619 0.57 -0.0 5,350,083 - Pf6N2E2_4619 0.58 +0.3 5,350,083 - Pf6N2E2_4619 0.58 -0.0 5,350,169 + Pf6N2E2_4619 0.63 +0.8 5,350,169 + Pf6N2E2_4619 0.63 +0.3 5,350,490 + Pf6N2E2_4619 0.82 -0.3 5,350,535 + Pf6N2E2_4619 0.85 +0.4 5,350,535 + Pf6N2E2_4619 0.85 -1.2 5,350,536 - Pf6N2E2_4619 0.85 -0.2 5,350,536 - Pf6N2E2_4619 0.85 +0.4 5,350,541 + Pf6N2E2_4619 0.85 +0.9 5,350,541 + Pf6N2E2_4619 0.85 -0.0 5,350,541 + Pf6N2E2_4619 0.85 +0.1 5,350,541 + Pf6N2E2_4619 0.85 +0.5 5,350,542 - Pf6N2E2_4619 0.85 -0.1 5,350,542 - Pf6N2E2_4619 0.85 +0.3 5,350,542 - Pf6N2E2_4619 0.85 +0.3 5,350,542 - Pf6N2E2_4619 0.85 +0.2 5,350,760 + +0.3 5,350,761 - -0.1 5,350,761 - -0.3 5,350,761 - -0.2 5,350,761 - -0.3 5,350,761 - +0.1 5,350,761 - -0.3 5,350,761 - +0.2 5,350,790 + +0.2 5,350,790 + +0.5 5,350,791 - +1.2 5,351,276 + Pf6N2E2_4620 0.55 -1.1 5,351,284 - Pf6N2E2_4620 0.56 -0.7 5,351,445 - Pf6N2E2_4620 0.74 -0.3 5,351,445 - Pf6N2E2_4620 0.74 +0.1 5,351,630 - +0.6 5,351,678 + -1.6 5,351,678 + -0.5 5,351,679 - +1.4 5,351,679 - -0.2 5,352,046 + Pf6N2E2_4622 0.10 +0.2 5,352,046 + Pf6N2E2_4622 0.10 +0.1 5,352,047 - Pf6N2E2_4622 0.10 -0.5 5,352,047 - Pf6N2E2_4622 0.10 +0.9 5,352,047 - Pf6N2E2_4622 0.10 +0.4 5,352,396 - Pf6N2E2_4622 0.51 +0.9 5,352,396 - Pf6N2E2_4622 0.51 +0.2 5,352,473 + Pf6N2E2_4622 0.60 +0.2 5,352,551 + Pf6N2E2_4622 0.69 +0.0 5,352,629 + +1.5 5,352,629 + Pf6N2E2_4622 0.79 +0.2 5,352,630 - Pf6N2E2_4622 0.79 +0.8 5,352,630 - Pf6N2E2_4622 0.79 -0.3 5,352,630 - Pf6N2E2_4622 0.79 +0.4 5,352,630 - Pf6N2E2_4622 0.79 -1.0
Or see this region's nucleotide sequence