Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3806

Experiment: D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT3805 and BT3806 are separated by 395 nucleotidesBT3806 and BT3807 are separated by 2 nucleotides BT3805: BT3805 - two-component system sensor histidine kinase (NCBI ptt file), at 4,947,917 to 4,950,274 BT3805 BT3806: BT3806 - conserved hypothetical protein (NCBI ptt file), at 4,950,670 to 4,955,109 BT3806 BT3807: BT3807 - conserved hypothetical protein (NCBI ptt file), at 4,955,112 to 4,957,478 BT3807 Position (kb) 4950 4951 4952 4953 4954 4955 4956Strain fitness (log2 ratio) -2 -1 0 1 2at 4949.890 kb on - strand, within BT3805at 4949.890 kb on - strand, within BT3805at 4949.890 kb on - strand, within BT3805at 4949.900 kb on - strand, within BT3805at 4950.055 kb on - strandat 4950.229 kb on + strandat 4950.305 kb on + strandat 4950.305 kb on + strandat 4950.306 kb on - strandat 4950.306 kb on - strandat 4950.309 kb on + strandat 4950.398 kb on - strandat 4950.420 kb on - strandat 4950.420 kb on - strandat 4950.450 kb on + strandat 4950.495 kb on + strandat 4950.508 kb on - strandat 4951.467 kb on + strand, within BT3806at 4952.407 kb on - strand, within BT3806

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
remove
4,949,890 - BT3805 0.84 -2.3
4,949,890 - BT3805 0.84 +1.5
4,949,890 - BT3805 0.84 -1.4
4,949,900 - BT3805 0.84 -1.8
4,950,055 - -1.4
4,950,229 + -2.7
4,950,305 + -0.3
4,950,305 + +1.3
4,950,306 - +0.8
4,950,306 - -0.3
4,950,309 + -0.4
4,950,398 - +2.7
4,950,420 - -0.6
4,950,420 - -0.4
4,950,450 + -0.1
4,950,495 + -2.3
4,950,508 - -0.4
4,951,467 + BT3806 0.18 -2.4
4,952,407 - BT3806 0.39 -0.8

Or see this region's nucleotide sequence