Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pspF and pspA are separated by 166 nucleotides pspA and pspB are separated by 53 nucleotides pspB and pspC overlap by 1 nucleotides pspC and pspD are separated by 8 nucleotides pspD and pspE are separated by 74 nucleotides
b1303: pspF - psp operon transcriptional activator (VIMSS), at 1,364,959 to 1,365,936
pspF
b1304: pspA - regulatory protein for phage-shock-protein operon (NCBI), at 1,366,103 to 1,366,771
pspA
b1305: pspB - phage shock protein B (NCBI), at 1,366,825 to 1,367,049
pspB
b1306: pspC - DNA-binding transcriptional activator (NCBI), at 1,367,049 to 1,367,408
pspC
b1307: pspD - peripheral inner membrane phage-shock protein (NCBI), at 1,367,417 to 1,367,638
pspD
b1308: pspE - thiosulfate:cyanide sulfurtransferase (rhodanese) (NCBI), at 1,367,713 to 1,368,027
pspE
Position (kb)
1366
1367 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1365.177 kb on + strand, within pspF at 1365.234 kb on - strand, within pspF at 1365.275 kb on + strand, within pspF at 1365.299 kb on - strand, within pspF at 1365.299 kb on - strand, within pspF at 1365.402 kb on + strand, within pspF at 1365.559 kb on - strand, within pspF at 1365.559 kb on - strand, within pspF at 1365.591 kb on + strand, within pspF at 1365.850 kb on + strand at 1366.212 kb on + strand, within pspA at 1366.230 kb on - strand, within pspA at 1366.244 kb on + strand, within pspA at 1366.373 kb on - strand, within pspA at 1366.560 kb on + strand, within pspA at 1366.628 kb on + strand, within pspA at 1366.818 kb on - strand at 1366.840 kb on - strand at 1366.896 kb on + strand, within pspB at 1366.931 kb on + strand, within pspB at 1366.945 kb on - strand, within pspB at 1367.086 kb on + strand, within pspC at 1367.105 kb on - strand, within pspC at 1367.191 kb on + strand, within pspC at 1367.191 kb on + strand, within pspC at 1367.384 kb on + strand at 1367.424 kb on + strand at 1367.424 kb on + strand at 1367.427 kb on + strand at 1367.591 kb on + strand, within pspD at 1367.631 kb on - strand at 1367.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 1,365,177 + pspF b1303 0.22 +0.1 1,365,234 - pspF b1303 0.28 +0.2 1,365,275 + pspF b1303 0.32 -0.4 1,365,299 - pspF b1303 0.35 +0.7 1,365,299 - pspF b1303 0.35 +0.9 1,365,402 + pspF b1303 0.45 +1.0 1,365,559 - pspF b1303 0.61 +0.9 1,365,559 - pspF b1303 0.61 +0.3 1,365,591 + pspF b1303 0.65 -1.1 1,365,850 + +0.3 1,366,212 + pspA b1304 0.16 -1.1 1,366,230 - pspA b1304 0.19 -0.1 1,366,244 + pspA b1304 0.21 -0.1 1,366,373 - pspA b1304 0.40 -1.8 1,366,560 + pspA b1304 0.68 +0.5 1,366,628 + pspA b1304 0.78 -1.4 1,366,818 - +0.2 1,366,840 - -0.7 1,366,896 + pspB b1305 0.32 +0.1 1,366,931 + pspB b1305 0.47 +0.3 1,366,945 - pspB b1305 0.53 -1.3 1,367,086 + pspC b1306 0.10 +2.3 1,367,105 - pspC b1306 0.16 -1.0 1,367,191 + pspC b1306 0.39 -1.1 1,367,191 + pspC b1306 0.39 -2.7 1,367,384 + +1.5 1,367,424 + -0.4 1,367,424 + -1.1 1,367,427 + +0.6 1,367,591 + pspD b1307 0.78 +0.7 1,367,631 - +1.5 1,367,631 - -1.1
Or see this region's nucleotide sequence