Strain Fitness in Escherichia coli BW25113 around b1272

Experiment: Chlorite 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntbtuR and yciK overlap by 4 nucleotidesyciK and sohB are separated by 219 nucleotidessohB and yciN are separated by 35 nucleotidesyciN and topA are separated by 379 nucleotides b1270: btuR - cob(I)yrinic acid a,c-diamide adenosyltransferase (NCBI), at 1,325,791 to 1,326,381 btuR b1271: yciK - short chain dehydrogenase (NCBI), at 1,326,378 to 1,327,136 yciK b1272: sohB - predicted inner membrane peptidase (NCBI), at 1,327,356 to 1,328,405 sohB b1273: yciN - hypothetical protein (NCBI), at 1,328,441 to 1,328,692 yciN b1274: topA - DNA topoisomerase I (NCBI), at 1,329,072 to 1,331,669 topA Position (kb) 1327 1328 1329Strain fitness (log2 ratio) -2 -1 0 1 2at 1326.420 kb on + strandat 1326.420 kb on + strandat 1326.546 kb on + strand, within yciKat 1326.719 kb on + strand, within yciKat 1326.742 kb on - strand, within yciKat 1326.851 kb on - strand, within yciKat 1327.275 kb on + strandat 1327.297 kb on + strandat 1327.500 kb on + strand, within sohBat 1327.505 kb on + strand, within sohBat 1327.505 kb on + strand, within sohBat 1327.511 kb on - strand, within sohBat 1327.511 kb on - strand, within sohBat 1327.565 kb on + strand, within sohBat 1327.565 kb on + strand, within sohBat 1327.752 kb on - strand, within sohBat 1327.752 kb on - strand, within sohBat 1327.797 kb on + strand, within sohBat 1327.797 kb on + strand, within sohBat 1327.902 kb on - strand, within sohBat 1328.003 kb on + strand, within sohBat 1328.032 kb on - strand, within sohBat 1328.039 kb on + strand, within sohBat 1328.039 kb on + strand, within sohBat 1328.144 kb on + strand, within sohBat 1328.162 kb on + strand, within sohBat 1328.202 kb on - strand, within sohBat 1328.211 kb on + strand, within sohBat 1328.211 kb on + strand, within sohBat 1328.364 kb on + strandat 1328.556 kb on + strand, within yciNat 1328.569 kb on + strand, within yciNat 1328.713 kb on + strandat 1328.713 kb on + strandat 1328.829 kb on + strandat 1328.918 kb on - strandat 1328.962 kb on - strandat 1328.965 kb on + strandat 1328.965 kb on + strandat 1329.065 kb on + strandat 1329.065 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
remove
1,326,420 + -0.7
1,326,420 + -0.1
1,326,546 + yciK b1271 0.22 -1.1
1,326,719 + yciK b1271 0.45 +1.9
1,326,742 - yciK b1271 0.48 -1.3
1,326,851 - yciK b1271 0.62 +0.4
1,327,275 + -0.1
1,327,297 + -0.8
1,327,500 + sohB b1272 0.14 -0.9
1,327,505 + sohB b1272 0.14 +0.2
1,327,505 + sohB b1272 0.14 -0.2
1,327,511 - sohB b1272 0.15 -0.1
1,327,511 - sohB b1272 0.15 -2.1
1,327,565 + sohB b1272 0.20 -1.7
1,327,565 + sohB b1272 0.20 -1.1
1,327,752 - sohB b1272 0.38 +1.3
1,327,752 - sohB b1272 0.38 -0.7
1,327,797 + sohB b1272 0.42 -2.1
1,327,797 + sohB b1272 0.42 -0.1
1,327,902 - sohB b1272 0.52 -1.7
1,328,003 + sohB b1272 0.62 -1.4
1,328,032 - sohB b1272 0.64 -0.9
1,328,039 + sohB b1272 0.65 -0.1
1,328,039 + sohB b1272 0.65 -1.7
1,328,144 + sohB b1272 0.75 -1.1
1,328,162 + sohB b1272 0.77 -1.7
1,328,202 - sohB b1272 0.81 +0.7
1,328,211 + sohB b1272 0.81 -1.5
1,328,211 + sohB b1272 0.81 -1.7
1,328,364 + +1.7
1,328,556 + yciN b1273 0.46 +1.8
1,328,569 + yciN b1273 0.51 +0.1
1,328,713 + +1.1
1,328,713 + +0.3
1,328,829 + -1.1
1,328,918 - +0.4
1,328,962 - -2.1
1,328,965 + +1.5
1,328,965 + -0.1
1,329,065 + -0.1
1,329,065 + -0.1

Or see this region's nucleotide sequence