Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS15950

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS15945 and ABZR86_RS15950 are separated by 195 nucleotidesABZR86_RS15950 and ABZR86_RS15955 overlap by 4 nucleotidesABZR86_RS15955 and ABZR86_RS15960 overlap by 4 nucleotides ABZR86_RS15945: ABZR86_RS15945 - dihydroxy-acid dehydratase, at 3,592,615 to 3,594,321 _RS15945 ABZR86_RS15950: ABZR86_RS15950 - 3-isopropylmalate dehydrogenase, at 3,594,517 to 3,595,614 _RS15950 ABZR86_RS15955: ABZR86_RS15955 - 3-isopropylmalate dehydratase small subunit, at 3,595,611 to 3,596,195 _RS15955 ABZR86_RS15960: ABZR86_RS15960 - 3-isopropylmalate dehydratase large subunit, at 3,596,192 to 3,597,607 _RS15960 Position (kb) 3594 3595 3596Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3593.901 kb on - strand, within ABZR86_RS15945at 3594.207 kb on + strandat 3594.207 kb on + strandat 3594.208 kb on - strandat 3594.346 kb on + strandat 3594.347 kb on - strandat 3594.347 kb on - strandat 3594.923 kb on + strand, within ABZR86_RS15950at 3594.923 kb on + strand, within ABZR86_RS15950at 3594.924 kb on - strand, within ABZR86_RS15950at 3595.142 kb on + strand, within ABZR86_RS15950at 3595.142 kb on + strand, within ABZR86_RS15950at 3595.143 kb on - strand, within ABZR86_RS15950at 3595.143 kb on - strand, within ABZR86_RS15950at 3595.143 kb on - strand, within ABZR86_RS15950at 3595.164 kb on + strand, within ABZR86_RS15950at 3595.194 kb on - strand, within ABZR86_RS15950at 3595.311 kb on - strand, within ABZR86_RS15950at 3595.503 kb on - strand, within ABZR86_RS15950at 3595.512 kb on + strandat 3595.512 kb on + strandat 3595.512 kb on + strandat 3595.512 kb on + strandat 3595.512 kb on + strandat 3595.512 kb on + strandat 3595.512 kb on + strandat 3595.513 kb on - strandat 3595.513 kb on - strandat 3595.520 kb on + strandat 3595.521 kb on - strandat 3595.521 kb on - strandat 3595.639 kb on + strandat 3595.640 kb on - strandat 3595.672 kb on + strand, within ABZR86_RS15955at 3595.673 kb on - strand, within ABZR86_RS15955at 3595.762 kb on + strand, within ABZR86_RS15955at 3595.762 kb on + strand, within ABZR86_RS15955at 3595.762 kb on + strand, within ABZR86_RS15955at 3595.763 kb on - strand, within ABZR86_RS15955at 3595.763 kb on - strand, within ABZR86_RS15955at 3595.763 kb on - strand, within ABZR86_RS15955at 3595.763 kb on - strand, within ABZR86_RS15955at 3596.106 kb on - strand, within ABZR86_RS15955at 3596.106 kb on - strand, within ABZR86_RS15955at 3596.106 kb on - strand, within ABZR86_RS15955at 3596.217 kb on + strandat 3596.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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3,593,901 - ABZR86_RS15945 0.75 -2.8
3,594,207 + -4.9
3,594,207 + -4.0
3,594,208 - -3.7
3,594,346 + -2.6
3,594,347 - -1.1
3,594,347 - +0.4
3,594,923 + ABZR86_RS15950 0.37 -5.7
3,594,923 + ABZR86_RS15950 0.37 -2.5
3,594,924 - ABZR86_RS15950 0.37 -2.2
3,595,142 + ABZR86_RS15950 0.57 -2.2
3,595,142 + ABZR86_RS15950 0.57 -1.3
3,595,143 - ABZR86_RS15950 0.57 -4.0
3,595,143 - ABZR86_RS15950 0.57 -3.0
3,595,143 - ABZR86_RS15950 0.57 -4.0
3,595,164 + ABZR86_RS15950 0.59 -0.7
3,595,194 - ABZR86_RS15950 0.62 -3.2
3,595,311 - ABZR86_RS15950 0.72 -3.8
3,595,503 - ABZR86_RS15950 0.90 -5.4
3,595,512 + -4.9
3,595,512 + -4.2
3,595,512 + -3.4
3,595,512 + -2.9
3,595,512 + -3.4
3,595,512 + -3.6
3,595,512 + -3.6
3,595,513 - -3.3
3,595,513 - -2.9
3,595,520 + -1.8
3,595,521 - -4.1
3,595,521 - -4.3
3,595,639 + -1.9
3,595,640 - +0.1
3,595,672 + ABZR86_RS15955 0.10 -2.2
3,595,673 - ABZR86_RS15955 0.11 -1.3
3,595,762 + ABZR86_RS15955 0.26 -4.1
3,595,762 + ABZR86_RS15955 0.26 -3.4
3,595,762 + ABZR86_RS15955 0.26 -4.4
3,595,763 - ABZR86_RS15955 0.26 -1.9
3,595,763 - ABZR86_RS15955 0.26 -4.2
3,595,763 - ABZR86_RS15955 0.26 -1.1
3,595,763 - ABZR86_RS15955 0.26 -1.6
3,596,106 - ABZR86_RS15955 0.85 -3.0
3,596,106 - ABZR86_RS15955 0.85 -0.7
3,596,106 - ABZR86_RS15955 0.85 -3.8
3,596,217 + -2.8
3,596,218 - -0.3

Or see this region's nucleotide sequence