Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS15945 and ABZR86_RS15950 are separated by 195 nucleotides ABZR86_RS15950 and ABZR86_RS15955 overlap by 4 nucleotides ABZR86_RS15955 and ABZR86_RS15960 overlap by 4 nucleotides
ABZR86_RS15945: ABZR86_RS15945 - dihydroxy-acid dehydratase, at 3,592,615 to 3,594,321
_RS15945
ABZR86_RS15950: ABZR86_RS15950 - 3-isopropylmalate dehydrogenase, at 3,594,517 to 3,595,614
_RS15950
ABZR86_RS15955: ABZR86_RS15955 - 3-isopropylmalate dehydratase small subunit, at 3,595,611 to 3,596,195
_RS15955
ABZR86_RS15960: ABZR86_RS15960 - 3-isopropylmalate dehydratase large subunit, at 3,596,192 to 3,597,607
_RS15960
Position (kb)
3594
3595
3596 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3593.901 kb on - strand, within ABZR86_RS15945 at 3594.207 kb on + strand at 3594.207 kb on + strand at 3594.208 kb on - strand at 3594.346 kb on + strand at 3594.347 kb on - strand at 3594.347 kb on - strand at 3594.923 kb on + strand, within ABZR86_RS15950 at 3594.923 kb on + strand, within ABZR86_RS15950 at 3594.924 kb on - strand, within ABZR86_RS15950 at 3595.142 kb on + strand, within ABZR86_RS15950 at 3595.142 kb on + strand, within ABZR86_RS15950 at 3595.143 kb on - strand, within ABZR86_RS15950 at 3595.143 kb on - strand, within ABZR86_RS15950 at 3595.143 kb on - strand, within ABZR86_RS15950 at 3595.164 kb on + strand, within ABZR86_RS15950 at 3595.194 kb on - strand, within ABZR86_RS15950 at 3595.311 kb on - strand, within ABZR86_RS15950 at 3595.503 kb on - strand, within ABZR86_RS15950 at 3595.512 kb on + strand at 3595.512 kb on + strand at 3595.512 kb on + strand at 3595.512 kb on + strand at 3595.512 kb on + strand at 3595.512 kb on + strand at 3595.512 kb on + strand at 3595.513 kb on - strand at 3595.513 kb on - strand at 3595.520 kb on + strand at 3595.521 kb on - strand at 3595.521 kb on - strand at 3595.639 kb on + strand at 3595.640 kb on - strand at 3595.672 kb on + strand, within ABZR86_RS15955 at 3595.673 kb on - strand, within ABZR86_RS15955 at 3595.762 kb on + strand, within ABZR86_RS15955 at 3595.762 kb on + strand, within ABZR86_RS15955 at 3595.762 kb on + strand, within ABZR86_RS15955 at 3595.763 kb on - strand, within ABZR86_RS15955 at 3595.763 kb on - strand, within ABZR86_RS15955 at 3595.763 kb on - strand, within ABZR86_RS15955 at 3595.763 kb on - strand, within ABZR86_RS15955 at 3596.106 kb on - strand, within ABZR86_RS15955 at 3596.106 kb on - strand, within ABZR86_RS15955 at 3596.106 kb on - strand, within ABZR86_RS15955 at 3596.217 kb on + strand at 3596.218 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 3,593,901 - ABZR86_RS15945 0.75 -2.8 3,594,207 + -4.9 3,594,207 + -4.0 3,594,208 - -3.7 3,594,346 + -2.6 3,594,347 - -1.1 3,594,347 - +0.4 3,594,923 + ABZR86_RS15950 0.37 -5.7 3,594,923 + ABZR86_RS15950 0.37 -2.5 3,594,924 - ABZR86_RS15950 0.37 -2.2 3,595,142 + ABZR86_RS15950 0.57 -2.2 3,595,142 + ABZR86_RS15950 0.57 -1.3 3,595,143 - ABZR86_RS15950 0.57 -4.0 3,595,143 - ABZR86_RS15950 0.57 -3.0 3,595,143 - ABZR86_RS15950 0.57 -4.0 3,595,164 + ABZR86_RS15950 0.59 -0.7 3,595,194 - ABZR86_RS15950 0.62 -3.2 3,595,311 - ABZR86_RS15950 0.72 -3.8 3,595,503 - ABZR86_RS15950 0.90 -5.4 3,595,512 + -4.9 3,595,512 + -4.2 3,595,512 + -3.4 3,595,512 + -2.9 3,595,512 + -3.4 3,595,512 + -3.6 3,595,512 + -3.6 3,595,513 - -3.3 3,595,513 - -2.9 3,595,520 + -1.8 3,595,521 - -4.1 3,595,521 - -4.3 3,595,639 + -1.9 3,595,640 - +0.1 3,595,672 + ABZR86_RS15955 0.10 -2.2 3,595,673 - ABZR86_RS15955 0.11 -1.3 3,595,762 + ABZR86_RS15955 0.26 -4.1 3,595,762 + ABZR86_RS15955 0.26 -3.4 3,595,762 + ABZR86_RS15955 0.26 -4.4 3,595,763 - ABZR86_RS15955 0.26 -1.9 3,595,763 - ABZR86_RS15955 0.26 -4.2 3,595,763 - ABZR86_RS15955 0.26 -1.1 3,595,763 - ABZR86_RS15955 0.26 -1.6 3,596,106 - ABZR86_RS15955 0.85 -3.0 3,596,106 - ABZR86_RS15955 0.85 -0.7 3,596,106 - ABZR86_RS15955 0.85 -3.8 3,596,217 + -2.8 3,596,218 - -0.3
Or see this region's nucleotide sequence