Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08945

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08940 and ABZR86_RS08945 are separated by 104 nucleotidesABZR86_RS08945 and ABZR86_RS08950 are separated by 111 nucleotidesABZR86_RS08950 and ABZR86_RS08955 are separated by 40 nucleotides ABZR86_RS08940: ABZR86_RS08940 - hypothetical protein, at 1,994,298 to 1,995,671 _RS08940 ABZR86_RS08945: ABZR86_RS08945 - C40 family peptidase, at 1,995,776 to 1,996,339 _RS08945 ABZR86_RS08950: ABZR86_RS08950 - MarR family transcriptional regulator, at 1,996,451 to 1,996,915 _RS08950 ABZR86_RS08955: ABZR86_RS08955 - organic hydroperoxide resistance protein, at 1,996,956 to 1,997,396 _RS08955 Position (kb) 1995 1996 1997Strain fitness (log2 ratio) -2 -1 0 1 2at 1994.824 kb on + strand, within ABZR86_RS08940at 1994.844 kb on + strand, within ABZR86_RS08940at 1994.844 kb on + strand, within ABZR86_RS08940at 1994.844 kb on + strand, within ABZR86_RS08940at 1994.863 kb on - strand, within ABZR86_RS08940at 1994.905 kb on + strand, within ABZR86_RS08940at 1994.905 kb on + strand, within ABZR86_RS08940at 1994.913 kb on + strand, within ABZR86_RS08940at 1994.970 kb on + strand, within ABZR86_RS08940at 1994.970 kb on + strand, within ABZR86_RS08940at 1995.189 kb on + strand, within ABZR86_RS08940at 1995.189 kb on + strand, within ABZR86_RS08940at 1995.189 kb on + strand, within ABZR86_RS08940at 1995.189 kb on + strand, within ABZR86_RS08940at 1995.190 kb on - strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.357 kb on + strand, within ABZR86_RS08940at 1995.358 kb on - strand, within ABZR86_RS08940at 1995.358 kb on - strand, within ABZR86_RS08940at 1995.358 kb on - strand, within ABZR86_RS08940at 1995.358 kb on - strand, within ABZR86_RS08940at 1995.358 kb on - strand, within ABZR86_RS08940at 1995.358 kb on - strand, within ABZR86_RS08940at 1995.358 kb on - strand, within ABZR86_RS08940at 1995.358 kb on - strand, within ABZR86_RS08940at 1995.358 kb on - strand, within ABZR86_RS08940at 1995.358 kb on - strand, within ABZR86_RS08940at 1995.387 kb on + strand, within ABZR86_RS08940at 1995.387 kb on + strand, within ABZR86_RS08940at 1995.388 kb on - strand, within ABZR86_RS08940at 1995.486 kb on + strand, within ABZR86_RS08940at 1995.486 kb on + strand, within ABZR86_RS08940at 1995.486 kb on + strand, within ABZR86_RS08940at 1995.486 kb on + strand, within ABZR86_RS08940at 1995.486 kb on + strand, within ABZR86_RS08940at 1995.486 kb on + strand, within ABZR86_RS08940at 1995.487 kb on - strand, within ABZR86_RS08940at 1995.487 kb on - strand, within ABZR86_RS08940at 1995.487 kb on - strand, within ABZR86_RS08940at 1995.585 kb on + strandat 1995.585 kb on + strandat 1995.585 kb on + strandat 1995.585 kb on + strandat 1995.585 kb on + strandat 1995.585 kb on + strandat 1995.586 kb on - strandat 1995.586 kb on - strandat 1995.586 kb on - strandat 1995.603 kb on + strandat 1995.899 kb on + strand, within ABZR86_RS08945at 1995.899 kb on + strand, within ABZR86_RS08945at 1995.900 kb on - strand, within ABZR86_RS08945at 1995.900 kb on - strand, within ABZR86_RS08945at 1996.027 kb on + strand, within ABZR86_RS08945at 1996.027 kb on + strand, within ABZR86_RS08945at 1996.067 kb on + strand, within ABZR86_RS08945at 1996.067 kb on + strand, within ABZR86_RS08945at 1996.067 kb on + strand, within ABZR86_RS08945at 1996.067 kb on + strand, within ABZR86_RS08945at 1996.067 kb on + strand, within ABZR86_RS08945at 1996.068 kb on - strand, within ABZR86_RS08945at 1996.068 kb on - strand, within ABZR86_RS08945at 1996.068 kb on - strand, within ABZR86_RS08945at 1996.068 kb on - strand, within ABZR86_RS08945at 1996.068 kb on - strand, within ABZR86_RS08945at 1996.073 kb on + strand, within ABZR86_RS08945at 1996.073 kb on + strand, within ABZR86_RS08945at 1996.073 kb on + strand, within ABZR86_RS08945at 1996.074 kb on - strand, within ABZR86_RS08945at 1996.074 kb on - strand, within ABZR86_RS08945at 1996.220 kb on + strand, within ABZR86_RS08945at 1996.220 kb on + strand, within ABZR86_RS08945at 1996.220 kb on + strand, within ABZR86_RS08945at 1996.220 kb on + strand, within ABZR86_RS08945at 1996.221 kb on - strand, within ABZR86_RS08945at 1996.221 kb on - strand, within ABZR86_RS08945at 1996.221 kb on - strand, within ABZR86_RS08945at 1996.221 kb on - strand, within ABZR86_RS08945at 1996.295 kb on + strandat 1996.337 kb on + strandat 1996.337 kb on + strandat 1996.337 kb on + strandat 1996.448 kb on + strandat 1996.449 kb on - strandat 1996.449 kb on - strandat 1996.449 kb on - strandat 1996.520 kb on + strand, within ABZR86_RS08950at 1996.520 kb on + strand, within ABZR86_RS08950at 1996.521 kb on - strand, within ABZR86_RS08950at 1996.521 kb on - strand, within ABZR86_RS08950at 1996.551 kb on - strand, within ABZR86_RS08950at 1996.584 kb on - strand, within ABZR86_RS08950at 1996.584 kb on - strand, within ABZR86_RS08950at 1996.592 kb on + strand, within ABZR86_RS08950at 1996.592 kb on + strand, within ABZR86_RS08950at 1996.593 kb on - strand, within ABZR86_RS08950at 1996.931 kb on + strandat 1996.932 kb on - strandat 1996.986 kb on + strandat 1997.027 kb on + strand, within ABZR86_RS08955at 1997.027 kb on + strand, within ABZR86_RS08955at 1997.163 kb on + strand, within ABZR86_RS08955at 1997.163 kb on + strand, within ABZR86_RS08955at 1997.163 kb on + strand, within ABZR86_RS08955at 1997.164 kb on - strand, within ABZR86_RS08955

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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1,994,824 + ABZR86_RS08940 0.38 -0.1
1,994,844 + ABZR86_RS08940 0.40 -0.7
1,994,844 + ABZR86_RS08940 0.40 +0.4
1,994,844 + ABZR86_RS08940 0.40 +0.1
1,994,863 - ABZR86_RS08940 0.41 -0.4
1,994,905 + ABZR86_RS08940 0.44 +0.5
1,994,905 + ABZR86_RS08940 0.44 +0.1
1,994,913 + ABZR86_RS08940 0.45 +1.1
1,994,970 + ABZR86_RS08940 0.49 +2.1
1,994,970 + ABZR86_RS08940 0.49 +0.6
1,995,189 + ABZR86_RS08940 0.65 +0.1
1,995,189 + ABZR86_RS08940 0.65 +0.4
1,995,189 + ABZR86_RS08940 0.65 +0.6
1,995,189 + ABZR86_RS08940 0.65 +0.9
1,995,190 - ABZR86_RS08940 0.65 +0.4
1,995,357 + ABZR86_RS08940 0.77 +0.0
1,995,357 + ABZR86_RS08940 0.77 -0.6
1,995,357 + ABZR86_RS08940 0.77 +0.9
1,995,357 + ABZR86_RS08940 0.77 -0.6
1,995,357 + ABZR86_RS08940 0.77 -0.5
1,995,357 + ABZR86_RS08940 0.77 -1.1
1,995,357 + ABZR86_RS08940 0.77 +0.2
1,995,357 + ABZR86_RS08940 0.77 -0.5
1,995,357 + ABZR86_RS08940 0.77 -0.7
1,995,357 + ABZR86_RS08940 0.77 -0.0
1,995,357 + ABZR86_RS08940 0.77 +0.0
1,995,357 + ABZR86_RS08940 0.77 -0.7
1,995,357 + ABZR86_RS08940 0.77 +0.2
1,995,357 + ABZR86_RS08940 0.77 +0.0
1,995,357 + ABZR86_RS08940 0.77 +0.9
1,995,358 - ABZR86_RS08940 0.77 -0.9
1,995,358 - ABZR86_RS08940 0.77 -0.5
1,995,358 - ABZR86_RS08940 0.77 +0.8
1,995,358 - ABZR86_RS08940 0.77 -0.8
1,995,358 - ABZR86_RS08940 0.77 -0.6
1,995,358 - ABZR86_RS08940 0.77 -2.0
1,995,358 - ABZR86_RS08940 0.77 +0.9
1,995,358 - ABZR86_RS08940 0.77 -0.5
1,995,358 - ABZR86_RS08940 0.77 +0.2
1,995,358 - ABZR86_RS08940 0.77 +1.1
1,995,387 + ABZR86_RS08940 0.79 -0.2
1,995,387 + ABZR86_RS08940 0.79 -0.0
1,995,388 - ABZR86_RS08940 0.79 -0.9
1,995,486 + ABZR86_RS08940 0.86 -1.5
1,995,486 + ABZR86_RS08940 0.86 -0.3
1,995,486 + ABZR86_RS08940 0.86 -0.0
1,995,486 + ABZR86_RS08940 0.86 +0.9
1,995,486 + ABZR86_RS08940 0.86 +0.2
1,995,486 + ABZR86_RS08940 0.86 +0.6
1,995,487 - ABZR86_RS08940 0.87 +0.3
1,995,487 - ABZR86_RS08940 0.87 +0.1
1,995,487 - ABZR86_RS08940 0.87 +0.1
1,995,585 + -0.3
1,995,585 + +0.4
1,995,585 + +1.4
1,995,585 + -0.2
1,995,585 + +0.4
1,995,585 + +0.4
1,995,586 - +0.9
1,995,586 - +0.1
1,995,586 - -0.1
1,995,603 + -0.0
1,995,899 + ABZR86_RS08945 0.22 -0.1
1,995,899 + ABZR86_RS08945 0.22 -1.3
1,995,900 - ABZR86_RS08945 0.22 -0.8
1,995,900 - ABZR86_RS08945 0.22 -1.2
1,996,027 + ABZR86_RS08945 0.45 -1.3
1,996,027 + ABZR86_RS08945 0.45 -0.6
1,996,067 + ABZR86_RS08945 0.52 +0.1
1,996,067 + ABZR86_RS08945 0.52 -0.9
1,996,067 + ABZR86_RS08945 0.52 -0.4
1,996,067 + ABZR86_RS08945 0.52 -1.0
1,996,067 + ABZR86_RS08945 0.52 -0.5
1,996,068 - ABZR86_RS08945 0.52 -1.0
1,996,068 - ABZR86_RS08945 0.52 -1.2
1,996,068 - ABZR86_RS08945 0.52 -1.2
1,996,068 - ABZR86_RS08945 0.52 -0.6
1,996,068 - ABZR86_RS08945 0.52 -0.9
1,996,073 + ABZR86_RS08945 0.53 -0.8
1,996,073 + ABZR86_RS08945 0.53 -1.3
1,996,073 + ABZR86_RS08945 0.53 -1.4
1,996,074 - ABZR86_RS08945 0.53 -0.4
1,996,074 - ABZR86_RS08945 0.53 -0.7
1,996,220 + ABZR86_RS08945 0.79 -1.5
1,996,220 + ABZR86_RS08945 0.79 -1.3
1,996,220 + ABZR86_RS08945 0.79 -1.1
1,996,220 + ABZR86_RS08945 0.79 +0.2
1,996,221 - ABZR86_RS08945 0.79 -1.1
1,996,221 - ABZR86_RS08945 0.79 -1.0
1,996,221 - ABZR86_RS08945 0.79 -0.3
1,996,221 - ABZR86_RS08945 0.79 -1.2
1,996,295 + -0.8
1,996,337 + -1.2
1,996,337 + +0.2
1,996,337 + +1.9
1,996,448 + -0.7
1,996,449 - +0.1
1,996,449 - +0.7
1,996,449 - +0.1
1,996,520 + ABZR86_RS08950 0.15 -0.4
1,996,520 + ABZR86_RS08950 0.15 +0.4
1,996,521 - ABZR86_RS08950 0.15 +0.3
1,996,521 - ABZR86_RS08950 0.15 -0.7
1,996,551 - ABZR86_RS08950 0.22 -0.1
1,996,584 - ABZR86_RS08950 0.29 -0.8
1,996,584 - ABZR86_RS08950 0.29 +0.1
1,996,592 + ABZR86_RS08950 0.30 +0.5
1,996,592 + ABZR86_RS08950 0.30 +0.6
1,996,593 - ABZR86_RS08950 0.31 +0.2
1,996,931 + +0.5
1,996,932 - +0.0
1,996,986 + -0.4
1,997,027 + ABZR86_RS08955 0.16 +1.0
1,997,027 + ABZR86_RS08955 0.16 -1.2
1,997,163 + ABZR86_RS08955 0.47 -0.3
1,997,163 + ABZR86_RS08955 0.47 +0.0
1,997,163 + ABZR86_RS08955 0.47 +0.0
1,997,164 - ABZR86_RS08955 0.47 -0.5

Or see this region's nucleotide sequence