Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02500

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS02485 and ABZR86_RS02490 overlap by 4 nucleotidesABZR86_RS02490 and ABZR86_RS02495 overlap by 4 nucleotidesABZR86_RS02495 and ABZR86_RS02500 overlap by 4 nucleotidesABZR86_RS02500 and ABZR86_RS02505 are separated by 49 nucleotidesABZR86_RS02505 and ABZR86_RS02510 are separated by 8 nucleotides ABZR86_RS02485: ABZR86_RS02485 - ATP-binding protein, at 511,108 to 511,869 _RS02485 ABZR86_RS02490: ABZR86_RS02490 - helix-turn-helix domain-containing protein, at 511,866 to 512,372 _RS02490 ABZR86_RS02495: ABZR86_RS02495 - hypothetical protein, at 512,369 to 512,578 _RS02495 ABZR86_RS02500: ABZR86_RS02500 - hypothetical protein, at 512,575 to 512,877 _RS02500 ABZR86_RS02505: ABZR86_RS02505 - hypothetical protein, at 512,927 to 513,382 _RS02505 ABZR86_RS02510: ABZR86_RS02510 - DNA cytosine methyltransferase, at 513,391 to 515,451 _RS02510 Position (kb) 512 513Strain fitness (log2 ratio) -1 0 1at 511.862 kb on + strandat 511.863 kb on - strandat 512.055 kb on + strand, within ABZR86_RS02490at 512.055 kb on + strand, within ABZR86_RS02490at 512.055 kb on + strand, within ABZR86_RS02490at 512.055 kb on + strand, within ABZR86_RS02490at 512.055 kb on + strand, within ABZR86_RS02490at 512.055 kb on + strand, within ABZR86_RS02490at 512.055 kb on + strand, within ABZR86_RS02490at 512.056 kb on - strand, within ABZR86_RS02490at 512.056 kb on - strand, within ABZR86_RS02490at 512.112 kb on + strand, within ABZR86_RS02490at 512.113 kb on - strand, within ABZR86_RS02490at 512.220 kb on + strand, within ABZR86_RS02490at 512.221 kb on - strand, within ABZR86_RS02490at 512.221 kb on - strand, within ABZR86_RS02490at 512.316 kb on - strand, within ABZR86_RS02490at 512.773 kb on + strand, within ABZR86_RS02500at 512.861 kb on - strandat 513.050 kb on + strand, within ABZR86_RS02505at 513.214 kb on - strand, within ABZR86_RS02505at 513.313 kb on - strand, within ABZR86_RS02505at 513.691 kb on - strand, within ABZR86_RS02510at 513.691 kb on - strand, within ABZR86_RS02510

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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511,862 + -0.9
511,863 - +0.2
512,055 + ABZR86_RS02490 0.37 +1.1
512,055 + ABZR86_RS02490 0.37 -1.5
512,055 + ABZR86_RS02490 0.37 +0.0
512,055 + ABZR86_RS02490 0.37 +0.5
512,055 + ABZR86_RS02490 0.37 -0.6
512,055 + ABZR86_RS02490 0.37 +0.5
512,055 + ABZR86_RS02490 0.37 -0.0
512,056 - ABZR86_RS02490 0.37 -0.8
512,056 - ABZR86_RS02490 0.37 +0.1
512,112 + ABZR86_RS02490 0.49 -0.5
512,113 - ABZR86_RS02490 0.49 -0.3
512,220 + ABZR86_RS02490 0.70 -0.3
512,221 - ABZR86_RS02490 0.70 +0.2
512,221 - ABZR86_RS02490 0.70 -0.0
512,316 - ABZR86_RS02490 0.89 +0.5
512,773 + ABZR86_RS02500 0.65 -0.9
512,861 - +0.2
513,050 + ABZR86_RS02505 0.27 +1.1
513,214 - ABZR86_RS02505 0.63 +0.0
513,313 - ABZR86_RS02505 0.85 +0.2
513,691 - ABZR86_RS02510 0.15 -0.8
513,691 - ABZR86_RS02510 0.15 +0.6

Or see this region's nucleotide sequence