Experiment: trans-aconitic (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04864 and PFR28_04865 are separated by 317 nucleotides PFR28_04865 and PFR28_04866 are separated by 271 nucleotides PFR28_04866 and PFR28_04867 overlap by 1 nucleotides
PFR28_04864: PFR28_04864 - Taurine-binding periplasmic protein, at 5,556,678 to 5,557,655
_04864
PFR28_04865: PFR28_04865 - Glutamate--cysteine ligase, at 5,557,973 to 5,559,556
_04865
PFR28_04866: PFR28_04866 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 5,559,828 to 5,560,211
_04866
PFR28_04867: PFR28_04867 - Protein YhgF, at 5,560,211 to 5,562,535
_04867
Position (kb) 5557
5558
5559
5560 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5557.123 kb on + strand, within PFR28_04864 at 5557.123 kb on + strand, within PFR28_04864 at 5557.124 kb on - strand, within PFR28_04864 at 5557.124 kb on - strand, within PFR28_04864 at 5557.124 kb on - strand, within PFR28_04864 at 5557.233 kb on + strand, within PFR28_04864 at 5557.240 kb on + strand, within PFR28_04864 at 5557.240 kb on + strand, within PFR28_04864 at 5557.240 kb on + strand, within PFR28_04864 at 5557.240 kb on + strand, within PFR28_04864 at 5557.240 kb on + strand, within PFR28_04864 at 5557.240 kb on + strand, within PFR28_04864 at 5557.516 kb on + strand, within PFR28_04864 at 5557.516 kb on + strand, within PFR28_04864 at 5557.750 kb on + strand at 5557.750 kb on + strand at 5557.766 kb on + strand at 5557.766 kb on + strand at 5557.766 kb on + strand at 5557.767 kb on - strand at 5557.767 kb on - strand at 5557.767 kb on - strand at 5557.767 kb on - strand at 5557.767 kb on - strand at 5557.818 kb on + strand at 5557.857 kb on - strand at 5557.857 kb on - strand at 5557.857 kb on - strand at 5557.902 kb on + strand at 5557.902 kb on + strand at 5557.902 kb on + strand at 5557.916 kb on - strand at 5557.946 kb on + strand at 5557.946 kb on + strand at 5557.946 kb on + strand at 5557.946 kb on + strand at 5557.946 kb on + strand at 5557.947 kb on - strand at 5557.947 kb on - strand at 5557.947 kb on - strand at 5557.947 kb on - strand at 5557.947 kb on - strand at 5557.947 kb on - strand at 5557.947 kb on - strand at 5557.947 kb on - strand at 5558.004 kb on + strand at 5558.005 kb on - strand at 5558.012 kb on + strand at 5558.013 kb on - strand at 5558.013 kb on - strand at 5558.018 kb on + strand at 5558.018 kb on + strand at 5558.018 kb on + strand at 5558.018 kb on + strand at 5558.018 kb on + strand at 5558.018 kb on + strand at 5558.018 kb on + strand at 5558.019 kb on - strand at 5558.019 kb on - strand at 5558.487 kb on + strand, within PFR28_04865 at 5558.488 kb on - strand, within PFR28_04865 at 5558.488 kb on - strand, within PFR28_04865 at 5558.488 kb on - strand, within PFR28_04865 at 5558.577 kb on + strand, within PFR28_04865 at 5558.577 kb on + strand, within PFR28_04865 at 5558.625 kb on + strand, within PFR28_04865 at 5558.625 kb on + strand, within PFR28_04865 at 5558.625 kb on + strand, within PFR28_04865 at 5558.625 kb on + strand, within PFR28_04865 at 5558.625 kb on + strand, within PFR28_04865 at 5558.625 kb on + strand, within PFR28_04865 at 5558.625 kb on + strand, within PFR28_04865 at 5558.626 kb on - strand, within PFR28_04865 at 5558.626 kb on - strand, within PFR28_04865 at 5558.626 kb on - strand, within PFR28_04865 at 5558.626 kb on - strand, within PFR28_04865 at 5558.626 kb on - strand, within PFR28_04865 at 5558.626 kb on - strand, within PFR28_04865 at 5558.626 kb on - strand, within PFR28_04865 at 5558.655 kb on + strand, within PFR28_04865 at 5558.656 kb on - strand, within PFR28_04865 at 5558.656 kb on - strand, within PFR28_04865 at 5558.656 kb on - strand, within PFR28_04865 at 5558.656 kb on - strand, within PFR28_04865 at 5558.656 kb on - strand, within PFR28_04865 at 5558.658 kb on + strand, within PFR28_04865 at 5558.658 kb on + strand, within PFR28_04865 at 5558.659 kb on - strand, within PFR28_04865 at 5558.733 kb on + strand, within PFR28_04865 at 5558.734 kb on - strand, within PFR28_04865 at 5558.742 kb on + strand, within PFR28_04865 at 5558.778 kb on + strand, within PFR28_04865 at 5558.779 kb on - strand, within PFR28_04865 at 5558.961 kb on + strand, within PFR28_04865 at 5558.961 kb on + strand, within PFR28_04865 at 5558.962 kb on - strand, within PFR28_04865 at 5558.962 kb on - strand, within PFR28_04865 at 5559.008 kb on - strand, within PFR28_04865 at 5559.009 kb on + strand, within PFR28_04865 at 5559.010 kb on - strand, within PFR28_04865 at 5559.010 kb on - strand, within PFR28_04865 at 5559.099 kb on + strand, within PFR28_04865 at 5559.099 kb on + strand, within PFR28_04865 at 5559.099 kb on + strand, within PFR28_04865 at 5559.099 kb on + strand, within PFR28_04865 at 5559.165 kb on + strand, within PFR28_04865 at 5559.165 kb on + strand, within PFR28_04865 at 5559.166 kb on - strand, within PFR28_04865 at 5559.166 kb on - strand, within PFR28_04865 at 5559.196 kb on - strand, within PFR28_04865 at 5559.199 kb on - strand, within PFR28_04865 at 5559.259 kb on - strand, within PFR28_04865 at 5559.280 kb on - strand, within PFR28_04865 at 5559.542 kb on + strand at 5559.610 kb on + strand at 5559.611 kb on - strand at 5559.829 kb on + strand at 5559.829 kb on + strand at 5559.829 kb on + strand at 5559.830 kb on - strand at 5559.830 kb on - strand at 5559.830 kb on - strand at 5559.830 kb on - strand at 5559.831 kb on + strand at 5559.831 kb on + strand at 5559.831 kb on + strand at 5559.831 kb on + strand at 5559.831 kb on + strand at 5559.831 kb on + strand at 5559.832 kb on - strand at 5559.832 kb on - strand at 5559.970 kb on + strand, within PFR28_04866 at 5559.970 kb on + strand, within PFR28_04866 at 5559.971 kb on - strand, within PFR28_04866 at 5559.971 kb on - strand, within PFR28_04866 at 5560.167 kb on + strand, within PFR28_04866 at 5560.168 kb on - strand, within PFR28_04866 at 5560.168 kb on - strand, within PFR28_04866 at 5560.504 kb on + strand, within PFR28_04867 at 5560.504 kb on + strand, within PFR28_04867 at 5560.504 kb on + strand, within PFR28_04867 at 5560.505 kb on - strand, within PFR28_04867 at 5560.505 kb on - strand, within PFR28_04867 at 5560.505 kb on - strand, within PFR28_04867
Per-strain Table
Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM remove 5,557,123 + PFR28_04864 0.46 -0.7 5,557,123 + PFR28_04864 0.46 -0.0 5,557,124 - PFR28_04864 0.46 -1.7 5,557,124 - PFR28_04864 0.46 +0.9 5,557,124 - PFR28_04864 0.46 -0.3 5,557,233 + PFR28_04864 0.57 -1.1 5,557,240 + PFR28_04864 0.57 +0.4 5,557,240 + PFR28_04864 0.57 +0.7 5,557,240 + PFR28_04864 0.57 -0.6 5,557,240 + PFR28_04864 0.57 +0.0 5,557,240 + PFR28_04864 0.57 -0.1 5,557,240 + PFR28_04864 0.57 +0.1 5,557,516 + PFR28_04864 0.86 -0.8 5,557,516 + PFR28_04864 0.86 -0.0 5,557,750 + -0.4 5,557,750 + +1.6 5,557,766 + -1.6 5,557,766 + +0.6 5,557,766 + -1.6 5,557,767 - +0.4 5,557,767 - -0.9 5,557,767 - +0.4 5,557,767 - +0.2 5,557,767 - +0.1 5,557,818 + -0.3 5,557,857 - +0.5 5,557,857 - +1.6 5,557,857 - -0.8 5,557,902 + +0.4 5,557,902 + -0.1 5,557,902 + +0.6 5,557,916 - -1.6 5,557,946 + -0.4 5,557,946 + -0.3 5,557,946 + -1.1 5,557,946 + -1.2 5,557,946 + +0.6 5,557,947 - +0.5 5,557,947 - +0.5 5,557,947 - -0.2 5,557,947 - -0.5 5,557,947 - -1.0 5,557,947 - -0.1 5,557,947 - +1.5 5,557,947 - +0.7 5,558,004 + +0.2 5,558,005 - +0.1 5,558,012 + +0.2 5,558,013 - +2.0 5,558,013 - -1.1 5,558,018 + -0.2 5,558,018 + -0.4 5,558,018 + -0.2 5,558,018 + -0.3 5,558,018 + +0.3 5,558,018 + +0.4 5,558,018 + -0.5 5,558,019 - +0.0 5,558,019 - -0.6 5,558,487 + PFR28_04865 0.32 -2.9 5,558,488 - PFR28_04865 0.33 +1.0 5,558,488 - PFR28_04865 0.33 -0.8 5,558,488 - PFR28_04865 0.33 -0.9 5,558,577 + PFR28_04865 0.38 -0.1 5,558,577 + PFR28_04865 0.38 -1.9 5,558,625 + PFR28_04865 0.41 +0.7 5,558,625 + PFR28_04865 0.41 -0.9 5,558,625 + PFR28_04865 0.41 -0.5 5,558,625 + PFR28_04865 0.41 -0.1 5,558,625 + PFR28_04865 0.41 -1.3 5,558,625 + PFR28_04865 0.41 -0.2 5,558,625 + PFR28_04865 0.41 -0.7 5,558,626 - PFR28_04865 0.41 -1.1 5,558,626 - PFR28_04865 0.41 -0.7 5,558,626 - PFR28_04865 0.41 -1.8 5,558,626 - PFR28_04865 0.41 -2.0 5,558,626 - PFR28_04865 0.41 -1.2 5,558,626 - PFR28_04865 0.41 -1.3 5,558,626 - PFR28_04865 0.41 -2.1 5,558,655 + PFR28_04865 0.43 -2.5 5,558,656 - PFR28_04865 0.43 -1.5 5,558,656 - PFR28_04865 0.43 -1.9 5,558,656 - PFR28_04865 0.43 -0.9 5,558,656 - PFR28_04865 0.43 -0.3 5,558,656 - PFR28_04865 0.43 -1.5 5,558,658 + PFR28_04865 0.43 +0.7 5,558,658 + PFR28_04865 0.43 -2.9 5,558,659 - PFR28_04865 0.43 +0.2 5,558,733 + PFR28_04865 0.48 -0.5 5,558,734 - PFR28_04865 0.48 -1.8 5,558,742 + PFR28_04865 0.49 -0.9 5,558,778 + PFR28_04865 0.51 -2.1 5,558,779 - PFR28_04865 0.51 +0.1 5,558,961 + PFR28_04865 0.62 -0.7 5,558,961 + PFR28_04865 0.62 -0.5 5,558,962 - PFR28_04865 0.62 -1.0 5,558,962 - PFR28_04865 0.62 -1.9 5,559,008 - PFR28_04865 0.65 -1.6 5,559,009 + PFR28_04865 0.65 -0.5 5,559,010 - PFR28_04865 0.65 -0.6 5,559,010 - PFR28_04865 0.65 -2.1 5,559,099 + PFR28_04865 0.71 -1.5 5,559,099 + PFR28_04865 0.71 -2.3 5,559,099 + PFR28_04865 0.71 -1.5 5,559,099 + PFR28_04865 0.71 +0.4 5,559,165 + PFR28_04865 0.75 -1.9 5,559,165 + PFR28_04865 0.75 +0.4 5,559,166 - PFR28_04865 0.75 -2.0 5,559,166 - PFR28_04865 0.75 -0.6 5,559,196 - PFR28_04865 0.77 -1.1 5,559,199 - PFR28_04865 0.77 -2.0 5,559,259 - PFR28_04865 0.81 -1.5 5,559,280 - PFR28_04865 0.83 -0.9 5,559,542 + +0.8 5,559,610 + +0.7 5,559,611 - +0.0 5,559,829 + +0.2 5,559,829 + -0.7 5,559,829 + +0.1 5,559,830 - +1.4 5,559,830 - +0.2 5,559,830 - -0.1 5,559,830 - +0.4 5,559,831 + -0.5 5,559,831 + +0.2 5,559,831 + -1.0 5,559,831 + -1.0 5,559,831 + -0.6 5,559,831 + -0.1 5,559,832 - +0.1 5,559,832 - -0.1 5,559,970 + PFR28_04866 0.37 +0.6 5,559,970 + PFR28_04866 0.37 -0.4 5,559,971 - PFR28_04866 0.37 -1.0 5,559,971 - PFR28_04866 0.37 -0.6 5,560,167 + PFR28_04866 0.88 +0.5 5,560,168 - PFR28_04866 0.89 +2.7 5,560,168 - PFR28_04866 0.89 -1.4 5,560,504 + PFR28_04867 0.13 -0.7 5,560,504 + PFR28_04867 0.13 +0.3 5,560,504 + PFR28_04867 0.13 -2.1 5,560,505 - PFR28_04867 0.13 -0.2 5,560,505 - PFR28_04867 0.13 +0.1 5,560,505 - PFR28_04867 0.13 -0.7
Or see this region's nucleotide sequence