Strain Fitness in Pseudomonas sp. RS175 around PFR28_04832

Experiment: trans-aconitic (C) 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_04830 and PFR28_04831 are separated by 22 nucleotidesPFR28_04831 and PFR28_04832 are separated by 156 nucleotidesPFR28_04832 and PFR28_04833 are separated by 105 nucleotidesPFR28_04833 and PFR28_04834 are separated by 38 nucleotides PFR28_04830: PFR28_04830 - Phosphoenolpyruvate-dependent phosphotransferase system, at 5,521,180 to 5,523,459 _04830 PFR28_04831: PFR28_04831 - RNA pyrophosphohydrolase, at 5,523,482 to 5,523,961 _04831 PFR28_04832: PFR28_04832 - putative phosphatase, at 5,524,118 to 5,524,774 _04832 PFR28_04833: PFR28_04833 - hypothetical protein, at 5,524,880 to 5,525,308 _04833 PFR28_04834: PFR28_04834 - L-threonine dehydratase biosynthetic IlvA, at 5,525,347 to 5,526,861 _04834 Position (kb) 5524 5525Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5523.167 kb on + strand, within PFR28_04830at 5523.167 kb on + strand, within PFR28_04830at 5523.167 kb on + strand, within PFR28_04830at 5523.168 kb on - strand, within PFR28_04830at 5523.168 kb on - strand, within PFR28_04830at 5523.338 kb on + strandat 5523.338 kb on + strandat 5523.339 kb on - strandat 5523.339 kb on - strandat 5523.387 kb on + strandat 5523.388 kb on - strandat 5523.388 kb on - strandat 5523.450 kb on + strandat 5523.450 kb on + strandat 5523.450 kb on + strandat 5523.450 kb on + strandat 5523.450 kb on + strandat 5523.451 kb on - strandat 5523.451 kb on - strandat 5523.576 kb on + strand, within PFR28_04831at 5523.576 kb on + strand, within PFR28_04831at 5523.576 kb on + strand, within PFR28_04831at 5523.576 kb on + strand, within PFR28_04831at 5523.576 kb on + strand, within PFR28_04831at 5523.577 kb on - strand, within PFR28_04831at 5523.577 kb on - strand, within PFR28_04831at 5523.610 kb on + strand, within PFR28_04831at 5523.810 kb on + strand, within PFR28_04831at 5523.894 kb on - strand, within PFR28_04831at 5523.916 kb on + strandat 5524.045 kb on + strandat 5524.045 kb on + strandat 5524.046 kb on - strandat 5524.046 kb on - strandat 5524.050 kb on + strandat 5524.050 kb on + strandat 5524.050 kb on + strandat 5524.050 kb on + strandat 5524.050 kb on + strandat 5524.050 kb on + strandat 5524.050 kb on + strandat 5524.050 kb on + strandat 5524.050 kb on + strandat 5524.051 kb on - strandat 5524.051 kb on - strandat 5524.051 kb on - strandat 5524.051 kb on - strandat 5524.051 kb on - strandat 5524.051 kb on - strandat 5524.051 kb on - strandat 5524.051 kb on - strandat 5524.051 kb on - strandat 5524.110 kb on + strandat 5524.110 kb on + strandat 5524.111 kb on - strandat 5524.187 kb on + strand, within PFR28_04832at 5524.187 kb on + strand, within PFR28_04832at 5524.187 kb on + strand, within PFR28_04832at 5524.188 kb on - strand, within PFR28_04832at 5524.223 kb on + strand, within PFR28_04832at 5524.223 kb on + strand, within PFR28_04832at 5524.223 kb on + strand, within PFR28_04832at 5524.224 kb on - strand, within PFR28_04832at 5524.224 kb on - strand, within PFR28_04832at 5524.224 kb on - strand, within PFR28_04832at 5524.224 kb on - strand, within PFR28_04832at 5524.224 kb on - strand, within PFR28_04832at 5524.224 kb on - strand, within PFR28_04832at 5524.247 kb on + strand, within PFR28_04832at 5524.247 kb on + strand, within PFR28_04832at 5524.247 kb on + strand, within PFR28_04832at 5524.248 kb on - strand, within PFR28_04832at 5524.256 kb on + strand, within PFR28_04832at 5524.256 kb on + strand, within PFR28_04832at 5524.257 kb on - strand, within PFR28_04832at 5524.257 kb on - strand, within PFR28_04832at 5524.356 kb on - strand, within PFR28_04832at 5524.383 kb on + strand, within PFR28_04832at 5524.384 kb on - strand, within PFR28_04832at 5524.542 kb on - strand, within PFR28_04832at 5524.563 kb on + strand, within PFR28_04832at 5524.563 kb on + strand, within PFR28_04832at 5524.563 kb on + strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.647 kb on - strand, within PFR28_04832at 5524.647 kb on - strand, within PFR28_04832at 5524.647 kb on - strand, within PFR28_04832at 5524.684 kb on - strand, within PFR28_04832at 5524.882 kb on - strandat 5524.882 kb on - strandat 5524.882 kb on - strandat 5525.040 kb on + strand, within PFR28_04833at 5525.040 kb on + strand, within PFR28_04833at 5525.040 kb on + strand, within PFR28_04833at 5525.041 kb on - strand, within PFR28_04833at 5525.321 kb on + strandat 5525.321 kb on + strandat 5525.341 kb on - strandat 5525.366 kb on + strandat 5525.367 kb on - strandat 5525.367 kb on - strandat 5525.587 kb on + strand, within PFR28_04834at 5525.587 kb on + strand, within PFR28_04834at 5525.587 kb on + strand, within PFR28_04834at 5525.588 kb on - strand, within PFR28_04834at 5525.628 kb on + strand, within PFR28_04834at 5525.628 kb on + strand, within PFR28_04834at 5525.628 kb on + strand, within PFR28_04834at 5525.629 kb on - strand, within PFR28_04834at 5525.629 kb on - strand, within PFR28_04834at 5525.629 kb on - strand, within PFR28_04834at 5525.629 kb on - strand, within PFR28_04834

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
remove
5,523,167 + PFR28_04830 0.87 -0.2
5,523,167 + PFR28_04830 0.87 +0.1
5,523,167 + PFR28_04830 0.87 +0.4
5,523,168 - PFR28_04830 0.87 +0.8
5,523,168 - PFR28_04830 0.87 +0.0
5,523,338 + -0.1
5,523,338 + -0.9
5,523,339 - -0.1
5,523,339 - +0.9
5,523,387 + +0.3
5,523,388 - +1.3
5,523,388 - +0.6
5,523,450 + +0.2
5,523,450 + +1.4
5,523,450 + +0.8
5,523,450 + +0.3
5,523,450 + +0.1
5,523,451 - -0.0
5,523,451 - +0.1
5,523,576 + PFR28_04831 0.20 -2.2
5,523,576 + PFR28_04831 0.20 -1.5
5,523,576 + PFR28_04831 0.20 -2.1
5,523,576 + PFR28_04831 0.20 -0.0
5,523,576 + PFR28_04831 0.20 -0.9
5,523,577 - PFR28_04831 0.20 +0.7
5,523,577 - PFR28_04831 0.20 +0.7
5,523,610 + PFR28_04831 0.27 -0.6
5,523,810 + PFR28_04831 0.68 -0.1
5,523,894 - PFR28_04831 0.86 +0.7
5,523,916 + -1.3
5,524,045 + -0.1
5,524,045 + +0.4
5,524,046 - +0.6
5,524,046 - -0.0
5,524,050 + -0.0
5,524,050 + -0.1
5,524,050 + +0.5
5,524,050 + -0.5
5,524,050 + -0.4
5,524,050 + -0.4
5,524,050 + +0.6
5,524,050 + +0.0
5,524,050 + +0.5
5,524,051 - -0.3
5,524,051 - +0.1
5,524,051 - +0.3
5,524,051 - +1.0
5,524,051 - +1.5
5,524,051 - -2.1
5,524,051 - +0.7
5,524,051 - +0.2
5,524,051 - +0.2
5,524,110 + -3.5
5,524,110 + -0.4
5,524,111 - -2.9
5,524,187 + PFR28_04832 0.11 -1.1
5,524,187 + PFR28_04832 0.11 -2.2
5,524,187 + PFR28_04832 0.11 -3.1
5,524,188 - PFR28_04832 0.11 -2.4
5,524,223 + PFR28_04832 0.16 -3.7
5,524,223 + PFR28_04832 0.16 -3.1
5,524,223 + PFR28_04832 0.16 -2.6
5,524,224 - PFR28_04832 0.16 -3.0
5,524,224 - PFR28_04832 0.16 -3.1
5,524,224 - PFR28_04832 0.16 -1.9
5,524,224 - PFR28_04832 0.16 -2.7
5,524,224 - PFR28_04832 0.16 -1.7
5,524,224 - PFR28_04832 0.16 -1.9
5,524,247 + PFR28_04832 0.20 -3.8
5,524,247 + PFR28_04832 0.20 +0.1
5,524,247 + PFR28_04832 0.20 -3.8
5,524,248 - PFR28_04832 0.20 -4.3
5,524,256 + PFR28_04832 0.21 -1.4
5,524,256 + PFR28_04832 0.21 -3.6
5,524,257 - PFR28_04832 0.21 -3.6
5,524,257 - PFR28_04832 0.21 -3.0
5,524,356 - PFR28_04832 0.36 -3.6
5,524,383 + PFR28_04832 0.40 -2.9
5,524,384 - PFR28_04832 0.40 -2.3
5,524,542 - PFR28_04832 0.65 -1.2
5,524,563 + PFR28_04832 0.68 -1.5
5,524,563 + PFR28_04832 0.68 -2.7
5,524,563 + PFR28_04832 0.68 -1.4
5,524,564 - PFR28_04832 0.68 -1.1
5,524,564 - PFR28_04832 0.68 -2.7
5,524,564 - PFR28_04832 0.68 -2.9
5,524,564 - PFR28_04832 0.68 -3.0
5,524,564 - PFR28_04832 0.68 -3.4
5,524,564 - PFR28_04832 0.68 -2.8
5,524,564 - PFR28_04832 0.68 -3.2
5,524,564 - PFR28_04832 0.68 -2.2
5,524,564 - PFR28_04832 0.68 -3.4
5,524,564 - PFR28_04832 0.68 -2.4
5,524,640 + PFR28_04832 0.79 -3.5
5,524,640 + PFR28_04832 0.79 -1.7
5,524,640 + PFR28_04832 0.79 -2.8
5,524,640 + PFR28_04832 0.79 -3.2
5,524,640 + PFR28_04832 0.79 -2.5
5,524,640 + PFR28_04832 0.79 -3.0
5,524,640 + PFR28_04832 0.79 -2.7
5,524,640 + PFR28_04832 0.79 -3.5
5,524,640 + PFR28_04832 0.79 -3.4
5,524,640 + PFR28_04832 0.79 -3.0
5,524,640 + PFR28_04832 0.79 -2.9
5,524,641 - PFR28_04832 0.80 -1.6
5,524,641 - PFR28_04832 0.80 -0.7
5,524,641 - PFR28_04832 0.80 -2.7
5,524,641 - PFR28_04832 0.80 -0.5
5,524,641 - PFR28_04832 0.80 -2.7
5,524,641 - PFR28_04832 0.80 -1.7
5,524,641 - PFR28_04832 0.80 -3.4
5,524,641 - PFR28_04832 0.80 -3.3
5,524,641 - PFR28_04832 0.80 -3.0
5,524,647 - PFR28_04832 0.81 -3.6
5,524,647 - PFR28_04832 0.81 -2.2
5,524,647 - PFR28_04832 0.81 -3.5
5,524,684 - PFR28_04832 0.86 -2.5
5,524,882 - +0.4
5,524,882 - +0.9
5,524,882 - -0.6
5,525,040 + PFR28_04833 0.37 +0.2
5,525,040 + PFR28_04833 0.37 +0.5
5,525,040 + PFR28_04833 0.37 -0.3
5,525,041 - PFR28_04833 0.38 -1.2
5,525,321 + -1.5
5,525,321 + +0.2
5,525,341 - -0.1
5,525,366 + -2.5
5,525,367 - -1.5
5,525,367 - -2.3
5,525,587 + PFR28_04834 0.16 -3.1
5,525,587 + PFR28_04834 0.16 -3.5
5,525,587 + PFR28_04834 0.16 -2.9
5,525,588 - PFR28_04834 0.16 -4.2
5,525,628 + PFR28_04834 0.19 -2.4
5,525,628 + PFR28_04834 0.19 -3.7
5,525,628 + PFR28_04834 0.19 -1.6
5,525,629 - PFR28_04834 0.19 -3.8
5,525,629 - PFR28_04834 0.19 -4.6
5,525,629 - PFR28_04834 0.19 -3.1
5,525,629 - PFR28_04834 0.19 -3.9

Or see this region's nucleotide sequence