Strain Fitness in Pseudomonas sp. RS175 around PFR28_04565

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
5,214,285	+				-0.3
5,214,286	-				-1.1
5,214,286	-				-2.3
5,214,286	-				-0.9
5,214,297	+		PFR28_04564	0.11	-1.3
5,214,297	+		PFR28_04564	0.11	-2.7
5,214,330	+		PFR28_04564	0.14	-1.6
5,214,331	-		PFR28_04564	0.14	-2.7
5,214,331	-		PFR28_04564	0.14	-1.6
5,214,331	-		PFR28_04564	0.14	-1.2
5,214,331	-		PFR28_04564	0.14	+0.1
5,214,334	+		PFR28_04564	0.15	-1.9
5,214,334	+		PFR28_04564	0.15	-0.7
5,214,334	+		PFR28_04564	0.15	-1.3
5,214,334	+		PFR28_04564	0.15	-1.7
5,214,334	+		PFR28_04564	0.15	-1.0
5,214,334	+		PFR28_04564	0.15	-0.5
5,214,334	+		PFR28_04564	0.15	-1.6
5,214,334	+		PFR28_04564	0.15	-1.5
5,214,334	+		PFR28_04564	0.15	-1.7
5,214,334	+		PFR28_04564	0.15	-3.2
5,214,334	+		PFR28_04564	0.15	-0.9
5,214,334	+		PFR28_04564	0.15	-1.8
5,214,334	+		PFR28_04564	0.15	-3.2
5,214,334	+		PFR28_04564	0.15	-0.2
5,214,334	+		PFR28_04564	0.15	-2.0
5,214,334	+		PFR28_04564	0.15	-0.5
5,214,334	+		PFR28_04564	0.15	-1.0
5,214,334	+		PFR28_04564	0.15	+0.2
5,214,334	+		PFR28_04564	0.15	-2.0
5,214,334	+		PFR28_04564	0.15	-2.2
5,214,335	-		PFR28_04564	0.15	-0.6
5,214,335	-		PFR28_04564	0.15	-1.9
5,214,335	-		PFR28_04564	0.15	-0.6
5,214,335	-		PFR28_04564	0.15	-2.0
5,214,335	-		PFR28_04564	0.15	-2.5
5,214,335	-		PFR28_04564	0.15	-1.3
5,214,335	-		PFR28_04564	0.15	-2.4
5,214,335	-		PFR28_04564	0.15	-1.5
5,214,335	-		PFR28_04564	0.15	-2.7
5,214,335	-		PFR28_04564	0.15	-1.3
5,214,335	-		PFR28_04564	0.15	-0.1
5,214,335	-		PFR28_04564	0.15	-1.3
5,214,335	-		PFR28_04564	0.15	-0.1
5,214,335	-		PFR28_04564	0.15	-2.5
5,214,354	+		PFR28_04564	0.17	-2.2
5,214,354	+		PFR28_04564	0.17	-0.8
5,214,354	+		PFR28_04564	0.17	-0.5
5,214,354	+		PFR28_04564	0.17	-1.3
5,214,354	+		PFR28_04564	0.17	-1.8
5,214,354	+		PFR28_04564	0.17	-3.2
5,214,576	+		PFR28_04564	0.39	+1.4
5,214,577	-		PFR28_04564	0.39	-0.5
5,214,735	+		PFR28_04564	0.55	-1.7
5,214,735	+		PFR28_04564	0.55	-1.9
5,214,736	-		PFR28_04564	0.55	-1.9
5,214,765	+		PFR28_04564	0.58	-0.7
5,214,765	+		PFR28_04564	0.58	-1.4
5,214,765	+		PFR28_04564	0.58	-0.3
5,214,765	+		PFR28_04564	0.58	-1.1
5,214,765	+		PFR28_04564	0.58	-1.7
5,214,765	+		PFR28_04564	0.58	-1.0
5,214,766	-		PFR28_04564	0.58	-0.1
5,214,846	+		PFR28_04564	0.66	+0.1
5,214,846	+		PFR28_04564	0.66	-2.1
5,214,846	+		PFR28_04564	0.66	-0.1
5,214,847	-		PFR28_04564	0.67	-2.0
5,214,847	-		PFR28_04564	0.67	-1.1
5,214,847	-		PFR28_04564	0.67	-2.5
5,214,924	+		PFR28_04564	0.74	-1.0
5,214,924	+		PFR28_04564	0.74	-1.6
5,214,924	+		PFR28_04564	0.74	-0.6
5,214,924	+		PFR28_04564	0.74	-1.5
5,214,925	-		PFR28_04564	0.74	-2.6
5,214,925	-		PFR28_04564	0.74	-0.5
5,214,925	-		PFR28_04564	0.74	-0.8
5,214,951	+		PFR28_04564	0.77	-0.4
5,215,247	+				-2.3
5,215,247	+				-2.3
5,215,247	+				-3.1
5,215,247	+				-2.7
5,215,247	+				-0.6
5,215,248	-				+0.1
5,215,248	-				+0.0
5,215,248	-				-0.1
5,215,248	-				-0.2
5,215,322	+				-3.4
5,215,322	+				-3.0
5,215,323	-				+0.9
5,215,483	+		PFR28_04565	0.25	-3.1
5,215,483	+		PFR28_04565	0.25	-3.3
5,215,483	+		PFR28_04565	0.25	-0.3
5,215,484	-		PFR28_04565	0.25	-3.6
5,215,484	-		PFR28_04565	0.25	-3.1
5,215,484	-		PFR28_04565	0.25	-1.2
5,215,484	-		PFR28_04565	0.25	-4.1
5,215,500	+		PFR28_04565	0.27	-2.9
5,215,500	+		PFR28_04565	0.27	-4.7
5,215,500	+		PFR28_04565	0.27	-4.4
5,215,500	+		PFR28_04565	0.27	-0.6
5,215,501	-		PFR28_04565	0.27	-2.3
5,215,501	-		PFR28_04565	0.27	-3.1
5,215,681	+		PFR28_04565	0.46	-1.8
5,215,681	+		PFR28_04565	0.46	-3.5
5,215,681	+		PFR28_04565	0.46	-2.1
5,215,681	+		PFR28_04565	0.46	-2.5
5,215,682	-		PFR28_04565	0.46	-2.1
5,215,682	-		PFR28_04565	0.46	-0.6
5,215,690	+		PFR28_04565	0.47	-1.1
5,215,691	-		PFR28_04565	0.47	-2.3
5,215,691	-		PFR28_04565	0.47	-1.8
5,215,864	+		PFR28_04565	0.66	-3.5
5,215,864	+		PFR28_04565	0.66	-1.6
5,215,906	+		PFR28_04565	0.70	-2.9
5,215,906	+		PFR28_04565	0.70	-3.2
5,215,906	+		PFR28_04565	0.70	-0.9
5,215,906	+		PFR28_04565	0.70	-1.7
5,215,907	-		PFR28_04565	0.71	-2.7
5,215,907	-		PFR28_04565	0.71	-1.1
5,215,907	-		PFR28_04565	0.71	-0.7
5,215,912	+		PFR28_04565	0.71	-2.1
5,215,912	+		PFR28_04565	0.71	-1.4
5,215,912	+		PFR28_04565	0.71	-1.6
5,215,912	+		PFR28_04565	0.71	-2.4
5,215,912	+		PFR28_04565	0.71	-2.4
5,215,912	+		PFR28_04565	0.71	-3.8
5,215,912	+		PFR28_04565	0.71	-3.5
5,215,912	+		PFR28_04565	0.71	-3.7
5,215,912	+		PFR28_04565	0.71	-0.9
5,215,912	+		PFR28_04565	0.71	-1.3
5,215,912	+		PFR28_04565	0.71	+0.1
5,215,912	+		PFR28_04565	0.71	-2.6
5,215,912	+		PFR28_04565	0.71	-2.6
5,215,912	+		PFR28_04565	0.71	-4.0
5,215,912	+		PFR28_04565	0.71	-0.9
5,215,913	-		PFR28_04565	0.71	-2.6
5,215,913	-		PFR28_04565	0.71	-4.1
5,215,913	-		PFR28_04565	0.71	-3.9
5,215,913	-		PFR28_04565	0.71	-2.9
5,215,913	-		PFR28_04565	0.71	-1.3
5,215,913	-		PFR28_04565	0.71	-3.1
5,215,913	-		PFR28_04565	0.71	-3.1
5,215,913	-		PFR28_04565	0.71	-2.1
5,215,913	-		PFR28_04565	0.71	-1.4
5,215,913	-		PFR28_04565	0.71	-2.5
5,215,913	-		PFR28_04565	0.71	+1.1
5,215,913	-		PFR28_04565	0.71	-2.9
5,215,913	-		PFR28_04565	0.71	-2.4
5,215,913	-		PFR28_04565	0.71	-1.7
5,215,913	-		PFR28_04565	0.71	-2.4
5,215,913	-		PFR28_04565	0.71	-0.6
5,215,913	-		PFR28_04565	0.71	-3.8
5,215,913	-		PFR28_04565	0.71	-1.5
5,216,098	+				-2.0
5,216,098	+				-0.5
5,216,099	-				-0.9
5,216,110	+				-2.5
5,216,110	+				-3.5
5,216,186	+				-2.3
5,216,186	+				-1.7
5,216,187	-				-3.9
5,216,187	-				-1.1
5,216,187	-				-0.5
5,216,187	-				-1.2
5,216,224	-				-1.4
5,216,224	-				+0.7
5,216,224	-				-0.8
5,216,244	+				-1.5
5,216,244	+				-1.2
5,216,244	+				-3.1
5,216,244	+				-1.6
5,216,245	-				-0.7
5,216,245	-				-0.3
5,216,245	-				-2.1
5,216,245	-				-0.4
5,216,409	+		PFR28_04566	0.31	-2.1
5,216,409	+		PFR28_04566	0.31	-2.8
5,216,409	+		PFR28_04566	0.31	-2.9
5,216,410	-		PFR28_04566	0.31	-2.9
5,216,410	-		PFR28_04566	0.31	-0.6
5,216,488	-		PFR28_04566	0.42	-0.7
5,216,500	+		PFR28_04566	0.43	-3.1
5,216,500	+		PFR28_04566	0.43	-1.2
5,216,501	-		PFR28_04566	0.43	-0.8
5,216,538	+		PFR28_04566	0.48	-3.7
5,216,538	+		PFR28_04566	0.48	-1.3
5,216,538	+		PFR28_04566	0.48	-0.7
5,216,538	+		PFR28_04566	0.48	-1.3
5,216,538	+		PFR28_04566	0.48	-0.8
5,216,538	+		PFR28_04566	0.48	-1.7
5,216,538	+		PFR28_04566	0.48	-2.3
5,216,539	-		PFR28_04566	0.48	+0.1
5,216,539	-		PFR28_04566	0.48	+0.2
5,216,539	-		PFR28_04566	0.48	+0.1
5,216,694	+		PFR28_04566	0.69	-1.9
5,216,694	+		PFR28_04566	0.69	-2.1
5,216,695	-		PFR28_04566	0.69	-0.6
5,216,695	-		PFR28_04566	0.69	-1.0
5,216,695	-		PFR28_04566	0.69	-2.0
5,216,695	-		PFR28_04566	0.69	-0.4
5,216,695	-		PFR28_04566	0.69	-0.7
5,216,695	-		PFR28_04566	0.69	-1.1
5,216,695	-		PFR28_04566	0.69	-0.7
5,216,706	+		PFR28_04566	0.71	-1.8
5,216,707	-		PFR28_04566	0.71	-1.7
5,216,707	-		PFR28_04566	0.71	-1.1
5,216,707	-		PFR28_04566	0.71	+1.7
5,216,715	+		PFR28_04566	0.72	-1.8
5,216,715	+		PFR28_04566	0.72	-2.0
5,216,716	-		PFR28_04566	0.72	-1.4
5,216,716	-		PFR28_04566	0.72	-1.3
5,216,733	+		PFR28_04566	0.74	-2.2
5,216,733	+		PFR28_04566	0.74	-1.2
5,216,775	+		PFR28_04566	0.80	-2.6
5,216,775	+		PFR28_04566	0.80	-2.0
5,216,776	-		PFR28_04566	0.80	-1.5
5,216,779	+		PFR28_04566	0.81	-4.1
5,216,779	+		PFR28_04566	0.81	-3.6
5,216,779	+		PFR28_04566	0.81	-2.0
5,216,780	-		PFR28_04566	0.81	-2.3
5,216,780	-		PFR28_04566	0.81	+1.4
5,216,780	-		PFR28_04566	0.81	-1.2
5,216,780	-		PFR28_04566	0.81	-2.6
5,216,820	+		PFR28_04566	0.86	-1.9
5,216,820	+		PFR28_04566	0.86	-1.5
5,216,820	+		PFR28_04566	0.86	-2.5
5,216,820	+		PFR28_04566	0.86	-3.5
5,216,820	+		PFR28_04566	0.86	-1.4
5,216,820	+		PFR28_04566	0.86	-2.5
5,216,821	-		PFR28_04566	0.86	-1.5
5,216,821	-		PFR28_04566	0.86	-2.2
5,216,821	-		PFR28_04566	0.86	-2.1
5,216,821	-		PFR28_04566	0.86	-1.7
5,216,821	-		PFR28_04566	0.86	-1.1
5,216,821	-		PFR28_04566	0.86	+0.4
5,216,821	-		PFR28_04566	0.86	-1.3
5,216,821	-		PFR28_04566	0.86	-1.7
5,216,821	-		PFR28_04566	0.86	-2.4
5,216,821	-		PFR28_04566	0.86	-1.4
5,217,178	+		PFR28_04567	0.22	-0.4
5,217,178	+		PFR28_04567	0.22	-1.2
5,217,178	+		PFR28_04567	0.22	-1.2
5,217,178	+		PFR28_04567	0.22	-3.2
5,217,179	-		PFR28_04567	0.22	-1.5
5,217,179	-		PFR28_04567	0.22	+1.5
5,217,179	-		PFR28_04567	0.22	-0.5
5,217,179	-		PFR28_04567	0.22	-0.4