Strain Fitness in Pseudomonas sp. RS175 around PFR28_03578

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03577 and PFR28_03578 are separated by 9 nucleotidesPFR28_03578 and PFR28_03579 overlap by 8 nucleotides PFR28_03577: PFR28_03577 - Multidrug resistance protein MdtB, at 4,133,135 to 4,136,248 _03577 PFR28_03578: PFR28_03578 - Transcriptional activator protein CzcR, at 4,136,258 to 4,136,932 _03578 PFR28_03579: PFR28_03579 - Adaptive-response sensory-kinase SasA, at 4,136,925 to 4,138,286 _03579 Position (kb) 4136 4137Strain fitness (log2 ratio) -2 -1 0 1at 4135.261 kb on + strand, within PFR28_03577at 4135.261 kb on + strand, within PFR28_03577at 4135.329 kb on - strand, within PFR28_03577at 4135.382 kb on + strand, within PFR28_03577at 4135.382 kb on + strand, within PFR28_03577at 4135.382 kb on + strand, within PFR28_03577at 4135.382 kb on + strand, within PFR28_03577at 4135.382 kb on + strand, within PFR28_03577at 4135.382 kb on + strand, within PFR28_03577at 4135.382 kb on + strand, within PFR28_03577at 4135.383 kb on - strand, within PFR28_03577at 4135.439 kb on + strand, within PFR28_03577at 4135.439 kb on + strand, within PFR28_03577at 4135.440 kb on - strand, within PFR28_03577at 4135.440 kb on - strand, within PFR28_03577at 4135.440 kb on - strand, within PFR28_03577at 4135.445 kb on + strand, within PFR28_03577at 4135.445 kb on + strand, within PFR28_03577at 4135.446 kb on - strand, within PFR28_03577at 4135.446 kb on - strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.742 kb on + strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.743 kb on - strand, within PFR28_03577at 4135.744 kb on + strand, within PFR28_03577at 4135.744 kb on + strand, within PFR28_03577at 4135.745 kb on - strand, within PFR28_03577at 4135.745 kb on - strand, within PFR28_03577at 4135.745 kb on - strand, within PFR28_03577at 4135.763 kb on + strand, within PFR28_03577at 4135.764 kb on - strand, within PFR28_03577at 4135.764 kb on - strand, within PFR28_03577at 4135.764 kb on - strand, within PFR28_03577at 4136.163 kb on + strandat 4136.163 kb on + strandat 4136.163 kb on + strandat 4136.163 kb on + strandat 4136.164 kb on - strandat 4136.164 kb on - strandat 4136.164 kb on - strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.165 kb on + strandat 4136.166 kb on - strandat 4136.166 kb on - strandat 4136.166 kb on - strandat 4136.166 kb on - strandat 4136.166 kb on - strandat 4136.166 kb on - strandat 4136.166 kb on - strandat 4136.166 kb on - strandat 4136.166 kb on - strandat 4136.166 kb on - strandat 4136.166 kb on - strandat 4136.300 kb on + strandat 4136.301 kb on - strandat 4136.301 kb on - strandat 4136.301 kb on - strandat 4136.301 kb on - strandat 4136.301 kb on - strandat 4136.330 kb on + strand, within PFR28_03578at 4136.331 kb on - strand, within PFR28_03578at 4136.331 kb on - strand, within PFR28_03578at 4136.546 kb on + strand, within PFR28_03578at 4136.906 kb on + strandat 4136.907 kb on - strandat 4136.930 kb on + strandat 4136.930 kb on + strandat 4137.009 kb on + strandat 4137.621 kb on + strand, within PFR28_03579at 4137.622 kb on - strand, within PFR28_03579at 4137.735 kb on + strand, within PFR28_03579at 4137.736 kb on - strand, within PFR28_03579at 4137.888 kb on + strand, within PFR28_03579at 4137.889 kb on - strand, within PFR28_03579

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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4,135,261 + PFR28_03577 0.68 +0.1
4,135,261 + PFR28_03577 0.68 -0.2
4,135,329 - PFR28_03577 0.70 -0.2
4,135,382 + PFR28_03577 0.72 +1.3
4,135,382 + PFR28_03577 0.72 +0.7
4,135,382 + PFR28_03577 0.72 -0.6
4,135,382 + PFR28_03577 0.72 +0.1
4,135,382 + PFR28_03577 0.72 -1.9
4,135,382 + PFR28_03577 0.72 +0.8
4,135,382 + PFR28_03577 0.72 +0.3
4,135,383 - PFR28_03577 0.72 +0.4
4,135,439 + PFR28_03577 0.74 +1.3
4,135,439 + PFR28_03577 0.74 +0.2
4,135,440 - PFR28_03577 0.74 +0.7
4,135,440 - PFR28_03577 0.74 -0.9
4,135,440 - PFR28_03577 0.74 -0.7
4,135,445 + PFR28_03577 0.74 -0.8
4,135,445 + PFR28_03577 0.74 +0.0
4,135,446 - PFR28_03577 0.74 +0.6
4,135,446 - PFR28_03577 0.74 +0.3
4,135,742 + PFR28_03577 0.84 -0.6
4,135,742 + PFR28_03577 0.84 -0.6
4,135,742 + PFR28_03577 0.84 +0.5
4,135,742 + PFR28_03577 0.84 +0.1
4,135,742 + PFR28_03577 0.84 -0.0
4,135,742 + PFR28_03577 0.84 -0.3
4,135,742 + PFR28_03577 0.84 +0.7
4,135,742 + PFR28_03577 0.84 -0.2
4,135,742 + PFR28_03577 0.84 -0.1
4,135,742 + PFR28_03577 0.84 +1.2
4,135,742 + PFR28_03577 0.84 +0.1
4,135,742 + PFR28_03577 0.84 -2.1
4,135,742 + PFR28_03577 0.84 -0.4
4,135,742 + PFR28_03577 0.84 -0.2
4,135,742 + PFR28_03577 0.84 -0.3
4,135,742 + PFR28_03577 0.84 -0.9
4,135,743 - PFR28_03577 0.84 +0.3
4,135,743 - PFR28_03577 0.84 +0.9
4,135,743 - PFR28_03577 0.84 +0.2
4,135,743 - PFR28_03577 0.84 -0.6
4,135,743 - PFR28_03577 0.84 +0.2
4,135,743 - PFR28_03577 0.84 +0.8
4,135,743 - PFR28_03577 0.84 -0.1
4,135,743 - PFR28_03577 0.84 -0.4
4,135,743 - PFR28_03577 0.84 +0.7
4,135,743 - PFR28_03577 0.84 -0.5
4,135,743 - PFR28_03577 0.84 +1.3
4,135,743 - PFR28_03577 0.84 -0.2
4,135,743 - PFR28_03577 0.84 +0.7
4,135,743 - PFR28_03577 0.84 -0.3
4,135,743 - PFR28_03577 0.84 +0.0
4,135,743 - PFR28_03577 0.84 -0.4
4,135,743 - PFR28_03577 0.84 -0.3
4,135,744 + PFR28_03577 0.84 -0.5
4,135,744 + PFR28_03577 0.84 -0.7
4,135,745 - PFR28_03577 0.84 -1.4
4,135,745 - PFR28_03577 0.84 +0.1
4,135,745 - PFR28_03577 0.84 -0.2
4,135,763 + PFR28_03577 0.84 +0.3
4,135,764 - PFR28_03577 0.84 +0.3
4,135,764 - PFR28_03577 0.84 +1.1
4,135,764 - PFR28_03577 0.84 +0.5
4,136,163 + -0.2
4,136,163 + -1.2
4,136,163 + -1.6
4,136,163 + -0.4
4,136,164 - +0.8
4,136,164 - +0.3
4,136,164 - +1.0
4,136,165 + +0.3
4,136,165 + +0.6
4,136,165 + +1.4
4,136,165 + +0.3
4,136,165 + -0.7
4,136,165 + -0.1
4,136,165 + +0.5
4,136,165 + -0.2
4,136,165 + -0.8
4,136,165 + -0.7
4,136,165 + -0.4
4,136,165 + +0.2
4,136,165 + +0.4
4,136,165 + +0.6
4,136,165 + +1.0
4,136,165 + -0.1
4,136,165 + +0.5
4,136,165 + +0.1
4,136,165 + -2.1
4,136,165 + +0.2
4,136,165 + -0.2
4,136,165 + -0.3
4,136,165 + +0.1
4,136,165 + -0.4
4,136,165 + -0.3
4,136,166 - +0.2
4,136,166 - +0.9
4,136,166 - -0.5
4,136,166 - -0.4
4,136,166 - -0.2
4,136,166 - +0.2
4,136,166 - -0.2
4,136,166 - -0.8
4,136,166 - -0.5
4,136,166 - +1.0
4,136,166 - -0.1
4,136,300 + -1.7
4,136,301 - -0.3
4,136,301 - -0.0
4,136,301 - +0.7
4,136,301 - -1.0
4,136,301 - +0.5
4,136,330 + PFR28_03578 0.11 -0.4
4,136,331 - PFR28_03578 0.11 -2.1
4,136,331 - PFR28_03578 0.11 -0.2
4,136,546 + PFR28_03578 0.43 -1.7
4,136,906 + -0.5
4,136,907 - -0.2
4,136,930 + +0.3
4,136,930 + -0.6
4,137,009 + -0.6
4,137,621 + PFR28_03579 0.51 -0.4
4,137,622 - PFR28_03579 0.51 -0.3
4,137,735 + PFR28_03579 0.59 +0.5
4,137,736 - PFR28_03579 0.60 -1.0
4,137,888 + PFR28_03579 0.71 +0.3
4,137,889 - PFR28_03579 0.71 -0.1

Or see this region's nucleotide sequence