Strain Fitness in Pseudomonas sp. RS175 around PFR28_03169

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
3,673,623	+		PFR28_03168	0.25	-1.2
3,673,623	+		PFR28_03168	0.25	-0.4
3,673,623	+		PFR28_03168	0.25	-0.8
3,673,623	+		PFR28_03168	0.25	-1.8
3,673,623	+		PFR28_03168	0.25	+1.2
3,673,624	-		PFR28_03168	0.25	+0.6
3,673,624	-		PFR28_03168	0.25	+0.1
3,673,624	-		PFR28_03168	0.25	+0.5
3,673,624	-		PFR28_03168	0.25	+1.0
3,673,624	-		PFR28_03168	0.25	-0.4
3,673,624	-		PFR28_03168	0.25	+0.6
3,673,624	-		PFR28_03168	0.25	+0.3
3,673,720	+		PFR28_03168	0.35	-0.7
3,673,720	+		PFR28_03168	0.35	+2.1
3,673,721	-		PFR28_03168	0.35	-0.3
3,673,721	-		PFR28_03168	0.35	-0.6
3,673,721	-		PFR28_03168	0.35	+0.8
3,673,721	-		PFR28_03168	0.35	+0.1
3,673,721	-		PFR28_03168	0.35	-0.2
3,673,993	+		PFR28_03168	0.63	-0.2
3,673,993	+		PFR28_03168	0.63	-0.3
3,673,993	+		PFR28_03168	0.63	+1.1
3,673,994	-		PFR28_03168	0.63	+0.2
3,673,994	-		PFR28_03168	0.63	-0.1
3,674,146	-		PFR28_03168	0.79	+0.1
3,674,226	+		PFR28_03168	0.87	-0.3
3,674,359	+				+1.5
3,674,408	+				-0.3
3,674,408	+				-0.1
3,674,408	+				+1.0
3,674,451	+				+0.5
3,674,451	+				+0.0
3,674,451	+				+0.5
3,674,452	-				-0.6
3,674,452	-				-2.3
3,674,452	-				-1.6
3,674,452	-				+0.8
3,674,452	-				-1.1
3,674,452	-				-1.7
3,674,454	+				+0.7
3,674,454	+				-0.8
3,674,454	+				-0.4
3,674,454	+				-0.8
3,674,454	+				-0.3
3,674,454	+				-2.0
3,674,455	-				-3.4
3,674,455	-				-1.3
3,674,455	-				-2.0
3,674,487	+				-0.1
3,674,559	+				-1.1
3,674,560	-				-0.3
3,674,622	+				-0.1
3,674,622	+				-1.2
3,674,622	+				-0.8
3,674,622	+				-1.1
3,674,653	+				-0.2
3,674,653	+				-2.6
3,674,654	-				-1.5
3,674,654	-				-1.1
3,674,654	-				-0.2
3,674,695	+		PFR28_03169	0.11	+0.1
3,674,695	+		PFR28_03169	0.11	-2.2
3,674,695	+		PFR28_03169	0.11	-2.3
3,674,695	+		PFR28_03169	0.11	-1.4
3,674,695	+		PFR28_03169	0.11	+0.0
3,674,695	+		PFR28_03169	0.11	+1.1
3,674,695	+		PFR28_03169	0.11	-2.9
3,674,695	+		PFR28_03169	0.11	-2.6
3,674,696	-		PFR28_03169	0.11	-0.5
3,674,696	-		PFR28_03169	0.11	-3.1
3,674,696	-		PFR28_03169	0.11	-3.2
3,674,696	-		PFR28_03169	0.11	-2.4
3,674,696	-		PFR28_03169	0.11	-1.0
3,674,696	-		PFR28_03169	0.11	-2.2
3,674,696	-		PFR28_03169	0.11	-1.9
3,674,704	+		PFR28_03169	0.12	-0.3
3,674,704	+		PFR28_03169	0.12	-0.7
3,674,705	-		PFR28_03169	0.12	-1.4
3,674,705	-		PFR28_03169	0.12	-3.4
3,674,705	-		PFR28_03169	0.12	-0.9
3,674,734	+		PFR28_03169	0.13	-0.3
3,674,734	+		PFR28_03169	0.13	-1.6
3,674,735	-		PFR28_03169	0.13	+0.1
3,674,830	+		PFR28_03169	0.18	-2.0
3,674,831	-		PFR28_03169	0.18	-0.9
3,674,831	-		PFR28_03169	0.18	-2.5
3,674,831	-		PFR28_03169	0.18	-2.0
3,674,831	-		PFR28_03169	0.18	-0.9
3,674,840	-		PFR28_03169	0.18	-0.4
3,674,869	+		PFR28_03169	0.20	-0.6
3,674,870	-		PFR28_03169	0.20	-1.3
3,675,133	+		PFR28_03169	0.32	-2.8
3,675,133	+		PFR28_03169	0.32	-0.3
3,675,133	+		PFR28_03169	0.32	-0.8
3,675,133	+		PFR28_03169	0.32	+0.2
3,675,133	+		PFR28_03169	0.32	-1.2
3,675,133	+		PFR28_03169	0.32	-1.4
3,675,134	-		PFR28_03169	0.32	-2.6
3,675,134	-		PFR28_03169	0.32	+0.2
3,675,134	-		PFR28_03169	0.32	-0.6
3,675,134	-		PFR28_03169	0.32	-1.5
3,675,134	-		PFR28_03169	0.32	-1.1
3,675,134	-		PFR28_03169	0.32	-1.3
3,675,134	-		PFR28_03169	0.32	-0.3
3,675,134	-		PFR28_03169	0.32	-0.7
3,675,134	-		PFR28_03169	0.32	-2.8
3,675,134	-		PFR28_03169	0.32	-1.3
3,675,134	-		PFR28_03169	0.32	-3.6
3,675,135	+		PFR28_03169	0.32	-1.8
3,675,135	+		PFR28_03169	0.32	-0.3
3,675,135	+		PFR28_03169	0.32	-0.4
3,675,136	-		PFR28_03169	0.32	+0.1
3,675,136	-		PFR28_03169	0.32	+1.0
3,675,136	-		PFR28_03169	0.32	+0.8
3,675,136	-		PFR28_03169	0.32	-0.8
3,675,136	-		PFR28_03169	0.32	+0.5
3,675,136	-		PFR28_03169	0.32	-0.6
3,675,157	+		PFR28_03169	0.33	-0.5
3,675,157	+		PFR28_03169	0.33	+0.0
3,675,157	+		PFR28_03169	0.33	-3.2
3,675,158	-		PFR28_03169	0.33	-1.0
3,675,168	+		PFR28_03169	0.34	-0.1
3,675,168	+		PFR28_03169	0.34	-2.1
3,675,168	+		PFR28_03169	0.34	+0.4
3,675,169	-		PFR28_03169	0.34	+0.4
3,675,175	+		PFR28_03169	0.34	-1.3
3,675,175	+		PFR28_03169	0.34	-1.6
3,675,175	+		PFR28_03169	0.34	-2.5
3,675,176	-		PFR28_03169	0.34	-2.5
3,675,176	-		PFR28_03169	0.34	-2.5
3,675,577	+		PFR28_03169	0.53	-0.4
3,675,577	+		PFR28_03169	0.53	-1.3
3,675,577	+		PFR28_03169	0.53	-1.1
3,675,577	+		PFR28_03169	0.53	-1.6
3,675,577	+		PFR28_03169	0.53	-3.2
3,675,578	-		PFR28_03169	0.53	-0.1
3,675,578	-		PFR28_03169	0.53	-0.6
3,675,610	+		PFR28_03169	0.55	-0.9
3,675,611	-		PFR28_03169	0.55	+0.5
3,675,649	+		PFR28_03169	0.57	-1.1
3,675,650	-		PFR28_03169	0.57	-1.8
3,675,650	-		PFR28_03169	0.57	-1.3
3,675,650	-		PFR28_03169	0.57	-0.8
3,675,650	-		PFR28_03169	0.57	-0.8
3,675,809	+		PFR28_03169	0.64	+0.2
3,675,865	+		PFR28_03169	0.67	-2.3
3,675,865	+		PFR28_03169	0.67	+0.3
3,675,865	+		PFR28_03169	0.67	-0.1
3,675,866	-		PFR28_03169	0.67	-1.5
3,675,866	-		PFR28_03169	0.67	-1.1
3,675,866	-		PFR28_03169	0.67	-1.1
3,675,866	-		PFR28_03169	0.67	+0.0
3,675,866	-		PFR28_03169	0.67	-0.8
3,676,049	-		PFR28_03169	0.75	-1.1
3,676,498	+				-0.8
3,676,498	+				-2.1
3,676,499	-				-1.2
3,676,580	+				+0.8
3,676,580	+				-0.1
3,676,580	+				+0.4
3,676,581	-				-0.1
3,676,634	-				-0.8
3,676,689	-				-0.5
3,676,689	-				-0.2
3,677,173	+		PFR28_03170	0.27	+1.3
3,677,212	+		PFR28_03170	0.29	-0.1
3,677,212	+		PFR28_03170	0.29	-0.2
3,677,212	+		PFR28_03170	0.29	+0.2
3,677,212	+		PFR28_03170	0.29	-1.8
3,677,212	+		PFR28_03170	0.29	-1.6
3,677,213	-		PFR28_03170	0.29	-0.7
3,677,213	-		PFR28_03170	0.29	-0.4
3,677,213	-		PFR28_03170	0.29	+0.9
3,677,392	+		PFR28_03170	0.39	-1.5
3,677,468	+		PFR28_03170	0.44	-0.2
3,677,468	+		PFR28_03170	0.44	-0.6
3,677,469	-		PFR28_03170	0.44	-0.2