Strain Fitness in Pseudomonas sp. RS175 around PFR28_01083

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01081 and PFR28_01082 overlap by 8 nucleotidesPFR28_01082 and PFR28_01083 are separated by 25 nucleotidesPFR28_01083 and PFR28_01084 are separated by 161 nucleotidesPFR28_01084 and PFR28_01085 overlap by 59 nucleotides PFR28_01081: PFR28_01081 - hypothetical protein, at 1,194,394 to 1,195,077 _01081 PFR28_01082: PFR28_01082 - hypothetical protein, at 1,195,070 to 1,195,288 _01082 PFR28_01083: PFR28_01083 - putative copper-importing P-type ATPase A, at 1,195,314 to 1,197,764 _01083 PFR28_01084: PFR28_01084 - hypothetical protein, at 1,197,926 to 1,198,534 _01084 PFR28_01085: PFR28_01085 - hypothetical protein, at 1,198,476 to 1,199,891 _01085 Position (kb) 1195 1196 1197 1198Strain fitness (log2 ratio) -3 -2 -1 0 1at 1194.360 kb on + strandat 1194.360 kb on + strandat 1194.360 kb on + strandat 1194.361 kb on - strandat 1194.361 kb on - strandat 1194.406 kb on - strandat 1194.625 kb on - strand, within PFR28_01081at 1194.625 kb on - strand, within PFR28_01081at 1194.625 kb on - strand, within PFR28_01081at 1194.626 kb on + strand, within PFR28_01081at 1194.626 kb on + strand, within PFR28_01081at 1194.626 kb on + strand, within PFR28_01081at 1194.626 kb on + strand, within PFR28_01081at 1194.626 kb on + strand, within PFR28_01081at 1194.627 kb on - strand, within PFR28_01081at 1194.788 kb on + strand, within PFR28_01081at 1194.899 kb on + strand, within PFR28_01081at 1194.899 kb on + strand, within PFR28_01081at 1194.899 kb on + strand, within PFR28_01081at 1194.900 kb on - strand, within PFR28_01081at 1194.900 kb on - strand, within PFR28_01081at 1194.900 kb on - strand, within PFR28_01081at 1194.900 kb on - strand, within PFR28_01081at 1194.923 kb on + strand, within PFR28_01081at 1194.924 kb on - strand, within PFR28_01081at 1194.924 kb on - strand, within PFR28_01081at 1195.006 kb on - strand, within PFR28_01081at 1195.006 kb on - strand, within PFR28_01081at 1195.006 kb on - strand, within PFR28_01081at 1195.006 kb on - strand, within PFR28_01081at 1195.198 kb on - strand, within PFR28_01082at 1195.230 kb on + strand, within PFR28_01082at 1195.231 kb on - strand, within PFR28_01082at 1195.231 kb on - strand, within PFR28_01082at 1195.275 kb on + strandat 1195.275 kb on + strandat 1195.275 kb on + strandat 1195.275 kb on + strandat 1195.276 kb on - strandat 1195.276 kb on - strandat 1195.276 kb on - strandat 1195.421 kb on + strandat 1195.421 kb on + strandat 1195.692 kb on + strand, within PFR28_01083at 1195.693 kb on - strand, within PFR28_01083at 1195.693 kb on - strand, within PFR28_01083at 1195.832 kb on + strand, within PFR28_01083at 1195.833 kb on - strand, within PFR28_01083at 1196.584 kb on - strand, within PFR28_01083at 1196.663 kb on - strand, within PFR28_01083at 1196.663 kb on - strand, within PFR28_01083at 1196.745 kb on + strand, within PFR28_01083at 1196.867 kb on + strand, within PFR28_01083at 1196.941 kb on + strand, within PFR28_01083at 1196.941 kb on + strand, within PFR28_01083at 1196.941 kb on + strand, within PFR28_01083at 1196.942 kb on - strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.987 kb on - strand, within PFR28_01083at 1196.987 kb on - strand, within PFR28_01083at 1196.987 kb on - strand, within PFR28_01083at 1197.082 kb on + strand, within PFR28_01083at 1197.082 kb on + strand, within PFR28_01083at 1197.082 kb on + strand, within PFR28_01083at 1197.083 kb on - strand, within PFR28_01083at 1197.360 kb on + strand, within PFR28_01083at 1197.360 kb on + strand, within PFR28_01083at 1197.360 kb on + strand, within PFR28_01083at 1197.361 kb on - strand, within PFR28_01083at 1197.538 kb on + strandat 1197.538 kb on + strandat 1197.610 kb on + strandat 1197.613 kb on + strandat 1197.613 kb on + strandat 1197.613 kb on + strandat 1197.614 kb on - strandat 1197.704 kb on + strandat 1197.742 kb on + strandat 1197.844 kb on - strandat 1197.844 kb on - strandat 1197.844 kb on - strandat 1197.927 kb on + strandat 1197.927 kb on + strandat 1197.927 kb on + strandat 1197.927 kb on + strandat 1197.928 kb on - strandat 1197.928 kb on - strandat 1197.928 kb on - strandat 1197.928 kb on - strandat 1198.092 kb on + strand, within PFR28_01084at 1198.092 kb on + strand, within PFR28_01084at 1198.317 kb on + strand, within PFR28_01084at 1198.317 kb on + strand, within PFR28_01084at 1198.318 kb on - strand, within PFR28_01084at 1198.318 kb on - strand, within PFR28_01084at 1198.320 kb on + strand, within PFR28_01084at 1198.320 kb on + strand, within PFR28_01084at 1198.320 kb on + strand, within PFR28_01084at 1198.320 kb on + strand, within PFR28_01084at 1198.320 kb on + strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.434 kb on + strand, within PFR28_01084at 1198.434 kb on + strand, within PFR28_01084at 1198.435 kb on - strand, within PFR28_01084at 1198.435 kb on - strand, within PFR28_01084at 1198.435 kb on - strand, within PFR28_01084at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.738 kb on + strand, within PFR28_01085at 1198.739 kb on - strand, within PFR28_01085at 1198.739 kb on - strand, within PFR28_01085

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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1,194,360 + -0.4
1,194,360 + -0.8
1,194,360 + +0.3
1,194,361 - +0.8
1,194,361 - -2.3
1,194,406 - +0.3
1,194,625 - PFR28_01081 0.34 -0.4
1,194,625 - PFR28_01081 0.34 -2.5
1,194,625 - PFR28_01081 0.34 +0.3
1,194,626 + PFR28_01081 0.34 -1.6
1,194,626 + PFR28_01081 0.34 +0.5
1,194,626 + PFR28_01081 0.34 -0.8
1,194,626 + PFR28_01081 0.34 -1.8
1,194,626 + PFR28_01081 0.34 -0.7
1,194,627 - PFR28_01081 0.34 -0.4
1,194,788 + PFR28_01081 0.58 -0.4
1,194,899 + PFR28_01081 0.74 -0.9
1,194,899 + PFR28_01081 0.74 -1.1
1,194,899 + PFR28_01081 0.74 -0.9
1,194,900 - PFR28_01081 0.74 +0.4
1,194,900 - PFR28_01081 0.74 -1.3
1,194,900 - PFR28_01081 0.74 -0.0
1,194,900 - PFR28_01081 0.74 -1.3
1,194,923 + PFR28_01081 0.77 -2.8
1,194,924 - PFR28_01081 0.77 -0.9
1,194,924 - PFR28_01081 0.77 -2.0
1,195,006 - PFR28_01081 0.89 -2.8
1,195,006 - PFR28_01081 0.89 -3.2
1,195,006 - PFR28_01081 0.89 +0.5
1,195,006 - PFR28_01081 0.89 -1.0
1,195,198 - PFR28_01082 0.58 -0.9
1,195,230 + PFR28_01082 0.73 -1.5
1,195,231 - PFR28_01082 0.74 -1.9
1,195,231 - PFR28_01082 0.74 -0.6
1,195,275 + -2.4
1,195,275 + -1.9
1,195,275 + -1.0
1,195,275 + -1.1
1,195,276 - -1.1
1,195,276 - -0.5
1,195,276 - -2.8
1,195,421 + -0.8
1,195,421 + +0.3
1,195,692 + PFR28_01083 0.15 -1.3
1,195,693 - PFR28_01083 0.15 -0.7
1,195,693 - PFR28_01083 0.15 -0.3
1,195,832 + PFR28_01083 0.21 -0.1
1,195,833 - PFR28_01083 0.21 -0.7
1,196,584 - PFR28_01083 0.52 -0.2
1,196,663 - PFR28_01083 0.55 -2.3
1,196,663 - PFR28_01083 0.55 -1.3
1,196,745 + PFR28_01083 0.58 -2.1
1,196,867 + PFR28_01083 0.63 -1.6
1,196,941 + PFR28_01083 0.66 -0.5
1,196,941 + PFR28_01083 0.66 -0.5
1,196,941 + PFR28_01083 0.66 -0.4
1,196,942 - PFR28_01083 0.66 -1.7
1,196,986 + PFR28_01083 0.68 -0.6
1,196,986 + PFR28_01083 0.68 -0.8
1,196,986 + PFR28_01083 0.68 -0.9
1,196,986 + PFR28_01083 0.68 -2.0
1,196,986 + PFR28_01083 0.68 +0.4
1,196,986 + PFR28_01083 0.68 -2.1
1,196,986 + PFR28_01083 0.68 -0.9
1,196,986 + PFR28_01083 0.68 -2.3
1,196,987 - PFR28_01083 0.68 -0.0
1,196,987 - PFR28_01083 0.68 -2.7
1,196,987 - PFR28_01083 0.68 -2.5
1,197,082 + PFR28_01083 0.72 -2.4
1,197,082 + PFR28_01083 0.72 -0.9
1,197,082 + PFR28_01083 0.72 +1.4
1,197,083 - PFR28_01083 0.72 -0.6
1,197,360 + PFR28_01083 0.83 -2.0
1,197,360 + PFR28_01083 0.83 -0.5
1,197,360 + PFR28_01083 0.83 -0.4
1,197,361 - PFR28_01083 0.84 -2.4
1,197,538 + -2.0
1,197,538 + +0.0
1,197,610 + -0.7
1,197,613 + -0.8
1,197,613 + -0.7
1,197,613 + -0.4
1,197,614 - -0.8
1,197,704 + -0.7
1,197,742 + -3.1
1,197,844 - +0.6
1,197,844 - +0.0
1,197,844 - -0.8
1,197,927 + +0.7
1,197,927 + +0.9
1,197,927 + -0.9
1,197,927 + +0.4
1,197,928 - -0.9
1,197,928 - +1.4
1,197,928 - -0.7
1,197,928 - +0.1
1,198,092 + PFR28_01084 0.27 -3.4
1,198,092 + PFR28_01084 0.27 -1.6
1,198,317 + PFR28_01084 0.64 -0.6
1,198,317 + PFR28_01084 0.64 -0.7
1,198,318 - PFR28_01084 0.64 +0.4
1,198,318 - PFR28_01084 0.64 +0.6
1,198,320 + PFR28_01084 0.65 -1.0
1,198,320 + PFR28_01084 0.65 -1.3
1,198,320 + PFR28_01084 0.65 -1.1
1,198,320 + PFR28_01084 0.65 -0.8
1,198,320 + PFR28_01084 0.65 -1.9
1,198,321 - PFR28_01084 0.65 -2.0
1,198,321 - PFR28_01084 0.65 +0.7
1,198,321 - PFR28_01084 0.65 -0.8
1,198,321 - PFR28_01084 0.65 -1.9
1,198,321 - PFR28_01084 0.65 -0.7
1,198,321 - PFR28_01084 0.65 -1.4
1,198,434 + PFR28_01084 0.83 -1.2
1,198,434 + PFR28_01084 0.83 -0.4
1,198,435 - PFR28_01084 0.84 -1.1
1,198,435 - PFR28_01084 0.84 -0.5
1,198,435 - PFR28_01084 0.84 -1.7
1,198,696 + PFR28_01085 0.16 -1.9
1,198,696 + PFR28_01085 0.16 -0.6
1,198,696 + PFR28_01085 0.16 -1.6
1,198,696 + PFR28_01085 0.16 -0.1
1,198,696 + PFR28_01085 0.16 -0.0
1,198,696 + PFR28_01085 0.16 +0.3
1,198,696 + PFR28_01085 0.16 -1.1
1,198,696 + PFR28_01085 0.16 +0.0
1,198,696 + PFR28_01085 0.16 -1.7
1,198,696 + PFR28_01085 0.16 -1.1
1,198,696 + PFR28_01085 0.16 -2.7
1,198,696 + PFR28_01085 0.16 -2.0
1,198,697 - PFR28_01085 0.16 +0.2
1,198,697 - PFR28_01085 0.16 -0.1
1,198,697 - PFR28_01085 0.16 +1.1
1,198,697 - PFR28_01085 0.16 +1.3
1,198,697 - PFR28_01085 0.16 +1.4
1,198,697 - PFR28_01085 0.16 -1.2
1,198,697 - PFR28_01085 0.16 -0.4
1,198,697 - PFR28_01085 0.16 +0.1
1,198,697 - PFR28_01085 0.16 +0.7
1,198,697 - PFR28_01085 0.16 +0.9
1,198,697 - PFR28_01085 0.16 +0.2
1,198,697 - PFR28_01085 0.16 -1.7
1,198,697 - PFR28_01085 0.16 -1.7
1,198,697 - PFR28_01085 0.16 -0.5
1,198,697 - PFR28_01085 0.16 +0.9
1,198,697 - PFR28_01085 0.16 -0.4
1,198,697 - PFR28_01085 0.16 -0.4
1,198,697 - PFR28_01085 0.16 +0.6
1,198,697 - PFR28_01085 0.16 +0.2
1,198,738 + PFR28_01085 0.19 +0.1
1,198,739 - PFR28_01085 0.19 -2.2
1,198,739 - PFR28_01085 0.19 +0.5

Or see this region's nucleotide sequence