Strain Fitness in Pseudomonas sp. RS175 around PFR28_00572

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00571 and PFR28_00572 are separated by 146 nucleotidesPFR28_00572 and PFR28_00573 are separated by 187 nucleotides PFR28_00571: PFR28_00571 - Putative glucose-6-phosphate 1-epimerase, at 612,626 to 613,480 _00571 PFR28_00572: PFR28_00572 - HTH-type transcriptional regulator HexR, at 613,627 to 614,496 _00572 PFR28_00573: PFR28_00573 - Glucose-6-phosphate 1-dehydrogenase, at 614,684 to 616,153 _00573 Position (kb) 613 614 615Strain fitness (log2 ratio) -3 -2 -1 0 1at 612.872 kb on + strand, within PFR28_00571at 612.873 kb on - strand, within PFR28_00571at 612.987 kb on + strand, within PFR28_00571at 612.987 kb on + strand, within PFR28_00571at 612.987 kb on + strand, within PFR28_00571at 612.987 kb on + strand, within PFR28_00571at 612.988 kb on - strand, within PFR28_00571at 612.988 kb on - strand, within PFR28_00571at 612.988 kb on - strand, within PFR28_00571at 612.988 kb on - strand, within PFR28_00571at 613.106 kb on + strand, within PFR28_00571at 613.114 kb on + strand, within PFR28_00571at 613.115 kb on - strand, within PFR28_00571at 613.134 kb on + strand, within PFR28_00571at 613.135 kb on - strand, within PFR28_00571at 613.166 kb on + strand, within PFR28_00571at 613.166 kb on + strand, within PFR28_00571at 613.167 kb on - strand, within PFR28_00571at 613.167 kb on - strand, within PFR28_00571at 613.167 kb on - strand, within PFR28_00571at 613.318 kb on + strand, within PFR28_00571at 613.609 kb on + strandat 613.610 kb on - strandat 613.610 kb on - strandat 613.610 kb on - strandat 613.610 kb on - strandat 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.970 kb on - strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.205 kb on - strand, within PFR28_00572at 614.205 kb on - strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.247 kb on - strand, within PFR28_00572at 614.247 kb on - strand, within PFR28_00572at 614.476 kb on + strandat 614.476 kb on + strandat 614.477 kb on - strandat 614.477 kb on - strandat 614.477 kb on - strandat 614.497 kb on - strandat 614.497 kb on - strandat 614.507 kb on + strandat 614.507 kb on + strandat 614.507 kb on + strandat 614.507 kb on + strandat 614.546 kb on + strandat 614.546 kb on + strandat 614.546 kb on + strandat 614.547 kb on - strandat 614.551 kb on + strandat 614.552 kb on - strandat 614.552 kb on - strandat 614.552 kb on - strandat 614.588 kb on - strandat 614.609 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.615 kb on + strandat 614.668 kb on + strandat 614.668 kb on + strandat 614.668 kb on + strandat 614.668 kb on + strandat 614.978 kb on + strand, within PFR28_00573at 614.978 kb on + strand, within PFR28_00573at 614.978 kb on + strand, within PFR28_00573at 614.978 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.153 kb on + strand, within PFR28_00573at 615.153 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.228 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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612,872 + PFR28_00571 0.29 +1.5
612,873 - PFR28_00571 0.29 +0.7
612,987 + PFR28_00571 0.42 +0.6
612,987 + PFR28_00571 0.42 +0.8
612,987 + PFR28_00571 0.42 +0.8
612,987 + PFR28_00571 0.42 -0.6
612,988 - PFR28_00571 0.42 +0.3
612,988 - PFR28_00571 0.42 +0.3
612,988 - PFR28_00571 0.42 -0.9
612,988 - PFR28_00571 0.42 -0.7
613,106 + PFR28_00571 0.56 -0.4
613,114 + PFR28_00571 0.57 +0.7
613,115 - PFR28_00571 0.57 -0.8
613,134 + PFR28_00571 0.59 -0.2
613,135 - PFR28_00571 0.60 -0.1
613,166 + PFR28_00571 0.63 +0.5
613,166 + PFR28_00571 0.63 -0.2
613,167 - PFR28_00571 0.63 -0.1
613,167 - PFR28_00571 0.63 -0.8
613,167 - PFR28_00571 0.63 +1.3
613,318 + PFR28_00571 0.81 +1.1
613,609 + -0.8
613,610 - +0.8
613,610 - -0.5
613,610 - +1.7
613,610 - -0.2
613,784 + PFR28_00572 0.18 -1.1
613,784 + PFR28_00572 0.18 -1.6
613,784 + PFR28_00572 0.18 -1.5
613,784 + PFR28_00572 0.18 -2.3
613,784 + PFR28_00572 0.18 +0.2
613,784 + PFR28_00572 0.18 +0.2
613,784 + PFR28_00572 0.18 -0.2
613,784 + PFR28_00572 0.18 -2.5
613,784 + PFR28_00572 0.18 -2.4
613,784 + PFR28_00572 0.18 -2.4
613,784 + PFR28_00572 0.18 -0.7
613,784 + PFR28_00572 0.18 -1.4
613,785 - PFR28_00572 0.18 -1.5
613,785 - PFR28_00572 0.18 -0.1
613,785 - PFR28_00572 0.18 -1.6
613,785 - PFR28_00572 0.18 -1.0
613,785 - PFR28_00572 0.18 -1.2
613,785 - PFR28_00572 0.18 -1.5
613,785 - PFR28_00572 0.18 -2.3
613,785 - PFR28_00572 0.18 -0.1
613,785 - PFR28_00572 0.18 +0.0
613,785 - PFR28_00572 0.18 +0.7
613,785 - PFR28_00572 0.18 -0.4
613,785 - PFR28_00572 0.18 -0.2
613,785 - PFR28_00572 0.18 -2.2
613,970 - PFR28_00572 0.39 -1.1
614,204 + PFR28_00572 0.66 -0.1
614,204 + PFR28_00572 0.66 -0.4
614,204 + PFR28_00572 0.66 +0.9
614,204 + PFR28_00572 0.66 +0.0
614,205 - PFR28_00572 0.66 +0.5
614,205 - PFR28_00572 0.66 -0.1
614,246 + PFR28_00572 0.71 +0.1
614,246 + PFR28_00572 0.71 -1.1
614,246 + PFR28_00572 0.71 -1.6
614,246 + PFR28_00572 0.71 -0.1
614,246 + PFR28_00572 0.71 -0.1
614,246 + PFR28_00572 0.71 -0.9
614,246 + PFR28_00572 0.71 -1.9
614,247 - PFR28_00572 0.71 -0.6
614,247 - PFR28_00572 0.71 -2.1
614,476 + -0.4
614,476 + -2.0
614,477 - -0.8
614,477 - -0.6
614,477 - -0.4
614,497 - -0.9
614,497 - -1.8
614,507 + -0.3
614,507 + -0.1
614,507 + -1.7
614,507 + -1.3
614,546 + -1.2
614,546 + -2.2
614,546 + -0.3
614,547 - +0.8
614,551 + -0.5
614,552 - +0.2
614,552 - +0.4
614,552 - -0.1
614,588 - -1.7
614,609 + +0.4
614,612 + +1.5
614,612 + +0.4
614,612 + -2.1
614,612 + -2.1
614,612 + +0.0
614,612 + -3.6
614,613 - +1.7
614,613 - +1.7
614,613 - +1.1
614,613 - +0.0
614,613 - -1.2
614,613 - +0.9
614,613 - -0.6
614,613 - -0.7
614,615 + -1.8
614,668 + +0.9
614,668 + -0.5
614,668 + +0.8
614,668 + -2.8
614,978 + PFR28_00573 0.20 +0.1
614,978 + PFR28_00573 0.20 +0.2
614,978 + PFR28_00573 0.20 +0.5
614,978 + PFR28_00573 0.20 -0.1
615,050 + PFR28_00573 0.25 +0.1
615,050 + PFR28_00573 0.25 -0.2
615,050 + PFR28_00573 0.25 +0.0
615,050 + PFR28_00573 0.25 +0.7
615,153 + PFR28_00573 0.32 +0.0
615,153 + PFR28_00573 0.32 -0.0
615,194 + PFR28_00573 0.35 +0.8
615,194 + PFR28_00573 0.35 +0.1
615,194 + PFR28_00573 0.35 -0.3
615,194 + PFR28_00573 0.35 +0.2
615,194 + PFR28_00573 0.35 -0.0
615,228 + PFR28_00573 0.37 +0.8
615,290 + PFR28_00573 0.41 +0.0
615,290 + PFR28_00573 0.41 -0.5
615,290 + PFR28_00573 0.41 -0.1
615,290 + PFR28_00573 0.41 +0.4
615,290 + PFR28_00573 0.41 -0.2
615,290 + PFR28_00573 0.41 +0.3
615,290 + PFR28_00573 0.41 -0.6
615,290 + PFR28_00573 0.41 -0.9
615,290 + PFR28_00573 0.41 +1.5
615,290 + PFR28_00573 0.41 -1.4
615,290 + PFR28_00573 0.41 -0.5
615,290 + PFR28_00573 0.41 +1.5
615,290 + PFR28_00573 0.41 -0.1
615,290 + PFR28_00573 0.41 +0.2
615,405 + PFR28_00573 0.49 -0.2
615,405 + PFR28_00573 0.49 +0.7
615,405 + PFR28_00573 0.49 +1.5

Or see this region's nucleotide sequence