Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25475

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25470 and AO353_25475 overlap by 4 nucleotidesAO353_25475 and AO353_25480 overlap by 4 nucleotides AO353_25470: AO353_25470 - acriflavine resistance protein B, at 5,613,565 to 5,616,642 _25470 AO353_25475: AO353_25475 - multidrug resistance protein, at 5,616,639 to 5,617,832 _25475 AO353_25480: AO353_25480 - multidrug transporter, at 5,617,829 to 5,619,229 _25480 Position (kb) 5616 5617 5618Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5615.838 kb on + strand, within AO353_25470at 5615.857 kb on + strand, within AO353_25470at 5615.857 kb on + strand, within AO353_25470at 5615.899 kb on - strand, within AO353_25470at 5615.899 kb on - strand, within AO353_25470at 5615.899 kb on - strand, within AO353_25470at 5615.899 kb on - strand, within AO353_25470at 5615.900 kb on + strand, within AO353_25470at 5615.901 kb on - strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.267 kb on + strand, within AO353_25470at 5616.267 kb on + strand, within AO353_25470at 5616.268 kb on - strand, within AO353_25470at 5616.528 kb on + strandat 5616.529 kb on - strandat 5616.558 kb on - strandat 5616.558 kb on - strandat 5616.558 kb on - strandat 5616.849 kb on + strand, within AO353_25475at 5616.849 kb on + strand, within AO353_25475at 5616.850 kb on - strand, within AO353_25475at 5616.850 kb on - strand, within AO353_25475at 5616.850 kb on - strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5617.363 kb on + strandat 5617.607 kb on + strand, within AO353_25475at 5617.823 kb on + strandat 5617.965 kb on + strandat 5618.642 kb on + strand, within AO353_25480at 5618.642 kb on + strand, within AO353_25480at 5618.642 kb on + strand, within AO353_25480at 5618.643 kb on - strand, within AO353_25480at 5618.643 kb on - strand, within AO353_25480at 5618.643 kb on - strand, within AO353_25480at 5618.643 kb on - strand, within AO353_25480at 5618.643 kb on - strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.716 kb on - strand, within AO353_25480at 5618.716 kb on - strand, within AO353_25480

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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5,615,838 + AO353_25470 0.74 -1.9
5,615,857 + AO353_25470 0.74 +0.4
5,615,857 + AO353_25470 0.74 -0.7
5,615,899 - AO353_25470 0.76 -0.3
5,615,899 - AO353_25470 0.76 +0.7
5,615,899 - AO353_25470 0.76 +1.3
5,615,899 - AO353_25470 0.76 -0.3
5,615,900 + AO353_25470 0.76 +1.0
5,615,901 - AO353_25470 0.76 -1.3
5,616,161 + AO353_25470 0.84 +1.3
5,616,161 + AO353_25470 0.84 -0.7
5,616,161 + AO353_25470 0.84 +0.1
5,616,161 + AO353_25470 0.84 +0.7
5,616,161 + AO353_25470 0.84 +0.2
5,616,161 + AO353_25470 0.84 +1.7
5,616,161 + AO353_25470 0.84 -1.3
5,616,161 + AO353_25470 0.84 +0.4
5,616,161 + AO353_25470 0.84 +0.3
5,616,162 - AO353_25470 0.84 -0.3
5,616,162 - AO353_25470 0.84 +0.4
5,616,162 - AO353_25470 0.84 +0.7
5,616,162 - AO353_25470 0.84 +0.6
5,616,162 - AO353_25470 0.84 -0.3
5,616,162 - AO353_25470 0.84 -1.6
5,616,162 - AO353_25470 0.84 +1.7
5,616,162 - AO353_25470 0.84 +1.5
5,616,162 - AO353_25470 0.84 +0.1
5,616,162 - AO353_25470 0.84 -0.9
5,616,267 + AO353_25470 0.88 -0.3
5,616,267 + AO353_25470 0.88 +2.3
5,616,268 - AO353_25470 0.88 +0.2
5,616,528 + -0.9
5,616,529 - +0.3
5,616,558 - +0.2
5,616,558 - -1.3
5,616,558 - +0.3
5,616,849 + AO353_25475 0.18 +0.8
5,616,849 + AO353_25475 0.18 +1.3
5,616,850 - AO353_25475 0.18 -0.3
5,616,850 - AO353_25475 0.18 +1.7
5,616,850 - AO353_25475 0.18 -0.0
5,616,853 + AO353_25475 0.18 +1.3
5,616,853 + AO353_25475 0.18 +1.3
5,616,853 + AO353_25475 0.18 +1.1
5,616,853 + AO353_25475 0.18 +1.7
5,616,853 + AO353_25475 0.18 -0.8
5,616,854 - AO353_25475 0.18 +0.4
5,616,854 - AO353_25475 0.18 +2.0
5,616,854 - AO353_25475 0.18 +0.7
5,616,854 - AO353_25475 0.18 -0.3
5,617,363 + +1.3
5,617,607 + AO353_25475 0.81 -0.3
5,617,823 + -0.7
5,617,965 + +0.9
5,618,642 + AO353_25480 0.58 +0.3
5,618,642 + AO353_25480 0.58 -1.3
5,618,642 + AO353_25480 0.58 +0.7
5,618,643 - AO353_25480 0.58 +0.6
5,618,643 - AO353_25480 0.58 +0.6
5,618,643 - AO353_25480 0.58 -0.9
5,618,643 - AO353_25480 0.58 -0.3
5,618,643 - AO353_25480 0.58 +2.9
5,618,715 + AO353_25480 0.63 +0.1
5,618,715 + AO353_25480 0.63 -0.3
5,618,715 + AO353_25480 0.63 -0.0
5,618,715 + AO353_25480 0.63 +1.2
5,618,715 + AO353_25480 0.63 +2.0
5,618,715 + AO353_25480 0.63 +1.5
5,618,716 - AO353_25480 0.63 -1.3
5,618,716 - AO353_25480 0.63 -1.3

Or see this region's nucleotide sequence