Experiment: Thallium(I) acetate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09935 and AO353_09940 are separated by 11 nucleotides AO353_09940 and AO353_09945 are separated by 240 nucleotides AO353_09945 and AO353_09950 are separated by 180 nucleotides
AO353_09935: AO353_09935 - phosphoribosylaminoimidazole carboxylase, at 2,169,157 to 2,170,239
_09935
AO353_09940: AO353_09940 - N5-carboxyaminoimidazole ribonucleotide mutase, at 2,170,251 to 2,170,742
_09940
AO353_09945: AO353_09945 - LysR family transcriptional regulator, at 2,170,983 to 2,171,891
_09945
AO353_09950: AO353_09950 - aspartate ammonia-lyase, at 2,172,072 to 2,173,496
_09950
Position (kb)
2170
2171
2172 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2170.825 kb on - strand at 2170.825 kb on - strand at 2170.858 kb on - strand at 2170.858 kb on - strand at 2170.858 kb on - strand at 2170.858 kb on - strand at 2170.858 kb on - strand at 2170.858 kb on - strand at 2170.858 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.860 kb on - strand at 2170.877 kb on - strand at 2170.877 kb on - strand at 2170.949 kb on + strand at 2170.949 kb on + strand at 2170.949 kb on + strand at 2170.949 kb on + strand at 2170.949 kb on + strand at 2170.949 kb on + strand at 2170.950 kb on - strand at 2170.950 kb on - strand at 2170.950 kb on - strand at 2171.031 kb on + strand at 2171.031 kb on + strand at 2171.031 kb on + strand at 2171.031 kb on + strand at 2171.031 kb on + strand at 2171.032 kb on - strand at 2171.032 kb on - strand at 2171.032 kb on - strand at 2171.032 kb on - strand at 2171.046 kb on + strand at 2171.062 kb on + strand at 2171.062 kb on + strand at 2171.063 kb on - strand at 2171.063 kb on - strand at 2171.218 kb on + strand, within AO353_09945 at 2171.218 kb on + strand, within AO353_09945 at 2171.219 kb on - strand, within AO353_09945 at 2171.219 kb on - strand, within AO353_09945 at 2171.219 kb on - strand, within AO353_09945 at 2171.219 kb on - strand, within AO353_09945 at 2171.293 kb on + strand, within AO353_09945 at 2171.293 kb on + strand, within AO353_09945 at 2171.294 kb on - strand, within AO353_09945 at 2171.443 kb on + strand, within AO353_09945 at 2171.443 kb on + strand, within AO353_09945 at 2171.443 kb on + strand, within AO353_09945 at 2171.443 kb on + strand, within AO353_09945 at 2171.444 kb on - strand, within AO353_09945 at 2171.444 kb on - strand, within AO353_09945 at 2171.678 kb on + strand, within AO353_09945 at 2171.678 kb on + strand, within AO353_09945 at 2171.858 kb on + strand at 2171.859 kb on - strand at 2171.859 kb on - strand at 2171.859 kb on - strand at 2171.859 kb on - strand at 2171.918 kb on + strand at 2171.918 kb on + strand at 2171.919 kb on - strand at 2171.919 kb on - strand at 2171.936 kb on + strand at 2171.937 kb on - strand at 2171.938 kb on + strand at 2171.938 kb on + strand at 2171.938 kb on + strand at 2171.939 kb on - strand at 2171.939 kb on - strand at 2171.939 kb on - strand at 2172.019 kb on - strand at 2172.019 kb on - strand at 2172.040 kb on + strand at 2172.068 kb on + strand at 2172.068 kb on + strand at 2172.069 kb on - strand at 2172.069 kb on - strand at 2172.119 kb on - strand at 2172.127 kb on + strand at 2172.128 kb on - strand at 2172.141 kb on + strand at 2172.141 kb on + strand at 2172.141 kb on + strand at 2172.141 kb on + strand at 2172.141 kb on + strand at 2172.141 kb on + strand at 2172.142 kb on - strand at 2172.142 kb on - strand at 2172.144 kb on + strand at 2172.145 kb on - strand at 2172.145 kb on - strand at 2172.145 kb on - strand at 2172.145 kb on - strand at 2172.460 kb on - strand, within AO353_09950 at 2172.465 kb on + strand, within AO353_09950 at 2172.465 kb on + strand, within AO353_09950 at 2172.465 kb on + strand, within AO353_09950 at 2172.465 kb on + strand, within AO353_09950 at 2172.465 kb on + strand, within AO353_09950 at 2172.465 kb on + strand, within AO353_09950 at 2172.465 kb on + strand, within AO353_09950 at 2172.465 kb on + strand, within AO353_09950
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml remove 2,170,825 - +1.6 2,170,825 - -0.2 2,170,858 - -1.4 2,170,858 - -0.6 2,170,858 - +0.4 2,170,858 - +1.6 2,170,858 - -0.2 2,170,858 - -1.2 2,170,858 - +0.3 2,170,860 - -0.0 2,170,860 - +1.1 2,170,860 - +0.2 2,170,860 - +0.2 2,170,860 - +0.0 2,170,860 - -0.0 2,170,860 - +1.2 2,170,860 - -1.6 2,170,860 - -0.0 2,170,860 - -0.4 2,170,860 - +0.4 2,170,860 - -1.1 2,170,860 - +0.4 2,170,860 - -1.2 2,170,877 - +2.4 2,170,877 - +2.8 2,170,949 + +1.6 2,170,949 + +0.4 2,170,949 + +2.4 2,170,949 + +0.2 2,170,949 + +0.4 2,170,949 + -0.2 2,170,950 - -0.4 2,170,950 - +0.7 2,170,950 - +0.4 2,171,031 + +0.4 2,171,031 + -0.4 2,171,031 + +0.4 2,171,031 + +2.4 2,171,031 + -0.6 2,171,032 - -1.2 2,171,032 - +1.0 2,171,032 - -1.5 2,171,032 - -0.6 2,171,046 + -0.9 2,171,062 + -0.6 2,171,062 + -0.5 2,171,063 - +0.4 2,171,063 - -0.6 2,171,218 + AO353_09945 0.26 -1.2 2,171,218 + AO353_09945 0.26 -0.6 2,171,219 - AO353_09945 0.26 -0.6 2,171,219 - AO353_09945 0.26 -1.6 2,171,219 - AO353_09945 0.26 -1.8 2,171,219 - AO353_09945 0.26 -0.4 2,171,293 + AO353_09945 0.34 -0.6 2,171,293 + AO353_09945 0.34 +0.4 2,171,294 - AO353_09945 0.34 -1.2 2,171,443 + AO353_09945 0.51 +0.4 2,171,443 + AO353_09945 0.51 -1.2 2,171,443 + AO353_09945 0.51 +0.4 2,171,443 + AO353_09945 0.51 -1.2 2,171,444 - AO353_09945 0.51 +0.4 2,171,444 - AO353_09945 0.51 +0.4 2,171,678 + AO353_09945 0.76 -0.4 2,171,678 + AO353_09945 0.76 +0.7 2,171,858 + -0.2 2,171,859 - +0.8 2,171,859 - -1.6 2,171,859 - +1.4 2,171,859 - +2.0 2,171,918 + -0.4 2,171,918 + +0.4 2,171,919 - +1.0 2,171,919 - -1.9 2,171,936 + -0.0 2,171,937 - +0.6 2,171,938 + +0.4 2,171,938 + -1.6 2,171,938 + -1.2 2,171,939 - +0.4 2,171,939 - +0.1 2,171,939 - +0.2 2,172,019 - -1.6 2,172,019 - -0.0 2,172,040 + +0.8 2,172,068 + +1.7 2,172,068 + +1.4 2,172,069 - -0.9 2,172,069 - -1.4 2,172,119 - -2.4 2,172,127 + -0.0 2,172,128 - -2.4 2,172,141 + +0.7 2,172,141 + -1.0 2,172,141 + -1.6 2,172,141 + +1.7 2,172,141 + -0.9 2,172,141 + +1.4 2,172,142 - +1.0 2,172,142 - -1.2 2,172,144 + +0.4 2,172,145 - -1.4 2,172,145 - -1.6 2,172,145 - +2.7 2,172,145 - +0.4 2,172,460 - AO353_09950 0.27 +0.4 2,172,465 + AO353_09950 0.28 +0.4 2,172,465 + AO353_09950 0.28 -2.2 2,172,465 + AO353_09950 0.28 -2.1 2,172,465 + AO353_09950 0.28 -0.6 2,172,465 + AO353_09950 0.28 -3.4 2,172,465 + AO353_09950 0.28 -0.6 2,172,465 + AO353_09950 0.28 -0.4 2,172,465 + AO353_09950 0.28 -1.8
Or see this region's nucleotide sequence