Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17605

Experiment: R2A with D-Cycloserine 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.2 mg/ml
4,385,461	-				+0.3
4,385,461	-				-1.3
4,385,548	+		CA265_RS17600	0.15	+0.9
4,385,549	-		CA265_RS17600	0.15	-0.7
4,385,553	+		CA265_RS17600	0.15	+0.3
4,385,553	+		CA265_RS17600	0.15	-0.5
4,385,558	+		CA265_RS17600	0.16	+0.4
4,385,559	-		CA265_RS17600	0.16	-0.5
4,385,559	-		CA265_RS17600	0.16	-0.5
4,385,768	-		CA265_RS17600	0.38	+0.8
4,385,797	-		CA265_RS17600	0.41	-0.1
4,385,898	+		CA265_RS17600	0.51	-0.0
4,385,909	+		CA265_RS17600	0.52	+0.3
4,385,909	+		CA265_RS17600	0.52	+0.9
4,385,910	-		CA265_RS17600	0.52	-0.4
4,386,002	-		CA265_RS17600	0.62	+0.8
4,386,002	-		CA265_RS17600	0.62	-1.6
4,386,037	-		CA265_RS17600	0.65	-0.9
4,386,076	+		CA265_RS17600	0.69	+0.4
4,386,077	-		CA265_RS17600	0.70	-0.7
4,386,147	-		CA265_RS17600	0.77	+0.1
4,386,147	-		CA265_RS17600	0.77	-0.8
4,386,212	-		CA265_RS17600	0.84	-1.1
4,386,216	-		CA265_RS17600	0.84	-1.2
4,386,278	-				-0.9
4,386,300	-				-0.1
4,386,420	+				+1.2
4,386,421	-				+0.6
4,386,438	+				-0.0
4,386,453	-				+1.8
4,386,532	+				-0.3
4,386,609	-		CA265_RS17605	0.13	+0.2
4,386,629	-		CA265_RS17605	0.15	-0.3
4,386,703	-		CA265_RS17605	0.20	+0.5
4,386,703	-		CA265_RS17605	0.20	+0.7
4,386,728	-		CA265_RS17605	0.22	+0.3
4,386,731	+		CA265_RS17605	0.22	-0.6
4,386,804	-		CA265_RS17605	0.28	-0.6
4,386,804	-		CA265_RS17605	0.28	+0.7
4,386,853	+		CA265_RS17605	0.32	+1.4
4,386,866	-		CA265_RS17605	0.33	+0.1
4,386,878	-		CA265_RS17605	0.34	-0.4
4,386,881	+		CA265_RS17605	0.34	+0.5
4,386,918	-		CA265_RS17605	0.37	+0.1
4,386,941	+		CA265_RS17605	0.38	+0.1
4,386,941	+		CA265_RS17605	0.38	-0.2
4,386,941	+		CA265_RS17605	0.38	-0.6
4,386,942	-		CA265_RS17605	0.38	-0.6
4,386,972	-		CA265_RS17605	0.41	+0.1
4,386,972	-		CA265_RS17605	0.41	+1.0
4,387,023	+		CA265_RS17605	0.45	+1.7
4,387,024	-		CA265_RS17605	0.45	+0.8
4,387,071	-		CA265_RS17605	0.48	+0.3
4,387,092	+		CA265_RS17605	0.50	+1.6
4,387,098	+		CA265_RS17605	0.50	+0.4
4,387,098	+		CA265_RS17605	0.50	+0.3
4,387,099	-		CA265_RS17605	0.50	+0.9
4,387,103	-		CA265_RS17605	0.51	+0.5
4,387,103	-		CA265_RS17605	0.51	+0.4
4,387,104	+		CA265_RS17605	0.51	+0.8
4,387,105	-		CA265_RS17605	0.51	+0.9
4,387,126	-		CA265_RS17605	0.52	+1.0
4,387,128	+		CA265_RS17605	0.52	-0.1
4,387,214	+		CA265_RS17605	0.59	+0.3
4,387,215	-		CA265_RS17605	0.59	+0.4
4,387,215	-		CA265_RS17605	0.59	+0.0
4,387,215	-		CA265_RS17605	0.59	+0.3
4,387,259	-		CA265_RS17605	0.62	-0.1
4,387,259	-		CA265_RS17605	0.62	+1.3
4,387,259	-		CA265_RS17605	0.62	+0.5
4,387,289	-		CA265_RS17605	0.65	-0.2
4,387,329	+		CA265_RS17605	0.68	-0.2
4,387,342	+		CA265_RS17605	0.69	+0.2
4,387,360	+		CA265_RS17605	0.70	+0.4
4,387,361	-		CA265_RS17605	0.70	+0.8
4,387,404	+		CA265_RS17605	0.73	-0.6
4,387,409	+		CA265_RS17605	0.74	+0.1
4,387,409	+		CA265_RS17605	0.74	+1.0
4,387,409	+		CA265_RS17605	0.74	+0.4
4,387,462	-		CA265_RS17605	0.78	-0.4
4,387,472	-		CA265_RS17605	0.78	+2.4
4,387,472	-		CA265_RS17605	0.78	+0.7
4,387,472	-		CA265_RS17605	0.78	+0.7
4,387,472	-		CA265_RS17605	0.78	-0.3
4,387,522	-		CA265_RS17605	0.82	+0.1
4,387,545	+		CA265_RS17605	0.84	-2.5
4,387,545	+		CA265_RS17605	0.84	-0.4
4,387,548	-		CA265_RS17605	0.84	+0.3
4,387,573	+		CA265_RS17605	0.86	+0.2
4,387,615	+		CA265_RS17605	0.89	+1.1
4,387,615	+		CA265_RS17605	0.89	+0.3
4,387,619	+		CA265_RS17605	0.90	-0.0
4,387,620	-		CA265_RS17605	0.90	+0.8
4,387,620	-		CA265_RS17605	0.90	+0.1
4,387,652	-				+1.0
4,387,731	-				-0.3
4,387,749	-				+0.3
4,387,778	+				+0.6
4,387,797	+				-0.4
4,387,797	+				+0.4
4,387,802	+				+0.4
4,387,856	-				-0.2
4,387,869	+				-0.1
4,387,898	+				-0.5
4,387,903	+				+1.2
4,387,938	+				-0.2
4,387,939	-				-0.0
4,387,939	-				-0.6
4,387,978	-				+0.4
4,388,037	+				-1.1
4,388,050	-				-1.2
4,388,104	+				-0.5
4,388,136	+				-0.4
4,388,136	+				+0.4
4,388,136	+				-0.2
4,388,149	+				-0.0
4,388,202	+				+0.5
4,388,206	+		CA265_RS17610	0.10	+0.5
4,388,230	+		CA265_RS17610	0.12	-0.4
4,388,235	+		CA265_RS17610	0.12	-1.0
4,388,235	+		CA265_RS17610	0.12	-0.5
4,388,235	+		CA265_RS17610	0.12	+1.0
4,388,236	-		CA265_RS17610	0.12	-0.6
4,388,236	-		CA265_RS17610	0.12	+0.4
4,388,280	+		CA265_RS17610	0.15	-0.4
4,388,281	-		CA265_RS17610	0.15	+0.7
4,388,281	-		CA265_RS17610	0.15	-1.8
4,388,284	+		CA265_RS17610	0.15	-0.1
4,388,327	-		CA265_RS17610	0.18	+1.0
4,388,340	+		CA265_RS17610	0.18	-0.4
4,388,349	+		CA265_RS17610	0.19	-0.4
4,388,350	-		CA265_RS17610	0.19	+0.3
4,388,372	+		CA265_RS17610	0.20	-0.6
4,388,392	-		CA265_RS17610	0.22	+0.4
4,388,392	-		CA265_RS17610	0.22	+0.6
4,388,532	-		CA265_RS17610	0.30	-1.0
4,388,580	+		CA265_RS17610	0.33	-0.3
4,388,658	+		CA265_RS17610	0.38	-0.2
4,388,658	+		CA265_RS17610	0.38	-0.2
4,388,734	+		CA265_RS17610	0.43	+0.8
4,388,735	-		CA265_RS17610	0.43	+0.2