Strain Fitness in Shewanella loihica PV-4 around Shew_1818

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1816 and Shew_1817 are separated by 58 nucleotidesShew_1817 and Shew_1818 are separated by 67 nucleotidesShew_1818 and Shew_1819 are separated by 397 nucleotides Shew_1816: Shew_1816 - ribosome modulation factor (RefSeq), at 2,089,384 to 2,089,560 _1816 Shew_1817: Shew_1817 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase (RefSeq), at 2,089,619 to 2,090,134 _1817 Shew_1818: Shew_1818 - ATP-dependent protease (RefSeq), at 2,090,202 to 2,091,911 _1818 Shew_1819: Shew_1819 - GntR family transcriptional regulator (RefSeq), at 2,092,309 to 2,092,977 _1819 Position (kb) 2090 2091 2092Strain fitness (log2 ratio) -1 0 1 2at 2089.380 kb on - strandat 2090.621 kb on + strand, within Shew_1818at 2091.591 kb on + strand, within Shew_1818at 2092.365 kb on - strandat 2092.365 kb on - strandat 2092.732 kb on + strand, within Shew_1819

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,089,380 - +0.4
2,090,621 + Shew_1818 0.25 -0.7
2,091,591 + Shew_1818 0.81 -1.0
2,092,365 - -0.4
2,092,365 - +0.6
2,092,732 + Shew_1819 0.63 +2.5

Or see this region's nucleotide sequence