Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24935 and AO353_24940 overlap by 4 nucleotides AO353_24940 and AO353_24945 are separated by 303 nucleotides AO353_24945 and AO353_24950 are separated by 24 nucleotides
AO353_24935: AO353_24935 - cysteine sulfinate desulfinase, at 5,499,788 to 5,501,062
_24935
AO353_24940: AO353_24940 - nitrogen fixation protein NifU, at 5,501,059 to 5,501,517
_24940
AO353_24945: AO353_24945 - hypothetical protein, at 5,501,821 to 5,502,357
_24945
AO353_24950: AO353_24950 - thioredoxin, at 5,502,382 to 5,504,370
_24950
Position (kb)
5501
5502 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5500.154 kb on + strand, within AO353_24935 at 5500.155 kb on - strand, within AO353_24935 at 5500.155 kb on - strand, within AO353_24935 at 5500.155 kb on - strand, within AO353_24935 at 5500.426 kb on - strand, within AO353_24935 at 5500.476 kb on + strand, within AO353_24935 at 5500.477 kb on - strand, within AO353_24935 at 5500.477 kb on - strand, within AO353_24935 at 5500.477 kb on - strand, within AO353_24935 at 5500.477 kb on - strand, within AO353_24935 at 5500.477 kb on - strand, within AO353_24935 at 5500.477 kb on - strand, within AO353_24935 at 5500.477 kb on - strand, within AO353_24935 at 5500.500 kb on - strand, within AO353_24935 at 5500.517 kb on - strand, within AO353_24935 at 5500.517 kb on - strand, within AO353_24935 at 5500.550 kb on + strand, within AO353_24935 at 5500.586 kb on + strand, within AO353_24935 at 5500.638 kb on - strand, within AO353_24935 at 5500.772 kb on + strand, within AO353_24935 at 5500.772 kb on + strand, within AO353_24935 at 5500.888 kb on + strand, within AO353_24935 at 5500.995 kb on - strand at 5501.200 kb on + strand, within AO353_24940 at 5501.201 kb on - strand, within AO353_24940 at 5501.346 kb on + strand, within AO353_24940 at 5501.346 kb on + strand, within AO353_24940 at 5501.346 kb on + strand, within AO353_24940 at 5501.346 kb on + strand, within AO353_24940 at 5501.346 kb on + strand, within AO353_24940 at 5501.346 kb on + strand, within AO353_24940 at 5501.346 kb on + strand, within AO353_24940 at 5501.346 kb on + strand, within AO353_24940 at 5501.346 kb on + strand, within AO353_24940 at 5501.346 kb on + strand, within AO353_24940 at 5501.347 kb on - strand, within AO353_24940 at 5501.347 kb on - strand, within AO353_24940 at 5501.347 kb on - strand, within AO353_24940 at 5501.347 kb on - strand at 5501.347 kb on - strand, within AO353_24940 at 5501.347 kb on - strand, within AO353_24940 at 5501.347 kb on - strand, within AO353_24940 at 5501.347 kb on - strand, within AO353_24940 at 5501.515 kb on + strand at 5501.515 kb on + strand at 5501.515 kb on + strand at 5501.515 kb on + strand at 5501.516 kb on - strand at 5501.538 kb on - strand at 5501.550 kb on + strand at 5501.767 kb on + strand at 5501.819 kb on - strand at 5502.086 kb on - strand, within AO353_24945 at 5502.086 kb on - strand, within AO353_24945 at 5502.130 kb on + strand, within AO353_24945 at 5502.130 kb on + strand, within AO353_24945 at 5502.131 kb on - strand, within AO353_24945 at 5502.131 kb on - strand, within AO353_24945 at 5502.131 kb on - strand, within AO353_24945 at 5502.238 kb on + strand, within AO353_24945 at 5502.238 kb on + strand, within AO353_24945 at 5502.239 kb on - strand, within AO353_24945 at 5502.239 kb on - strand, within AO353_24945 at 5502.239 kb on - strand, within AO353_24945 at 5502.239 kb on - strand, within AO353_24945 at 5502.239 kb on - strand, within AO353_24945
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 5,500,154 + AO353_24935 0.29 +0.5 5,500,155 - AO353_24935 0.29 +2.8 5,500,155 - AO353_24935 0.29 -0.5 5,500,155 - AO353_24935 0.29 -1.5 5,500,426 - AO353_24935 0.50 +1.1 5,500,476 + AO353_24935 0.54 +1.1 5,500,477 - AO353_24935 0.54 +0.5 5,500,477 - AO353_24935 0.54 +0.2 5,500,477 - AO353_24935 0.54 -0.5 5,500,477 - AO353_24935 0.54 +0.5 5,500,477 - AO353_24935 0.54 -0.2 5,500,477 - AO353_24935 0.54 +0.2 5,500,477 - AO353_24935 0.54 +0.5 5,500,500 - AO353_24935 0.56 +1.1 5,500,517 - AO353_24935 0.57 -0.9 5,500,517 - AO353_24935 0.57 -0.5 5,500,550 + AO353_24935 0.60 -0.5 5,500,586 + AO353_24935 0.63 -0.3 5,500,638 - AO353_24935 0.67 +2.5 5,500,772 + AO353_24935 0.77 -0.2 5,500,772 + AO353_24935 0.77 +0.4 5,500,888 + AO353_24935 0.86 -1.5 5,500,995 - -1.5 5,501,200 + AO353_24940 0.31 +0.2 5,501,201 - AO353_24940 0.31 -0.9 5,501,346 + AO353_24940 0.63 -1.8 5,501,346 + AO353_24940 0.63 -0.5 5,501,346 + AO353_24940 0.63 -1.1 5,501,346 + AO353_24940 0.63 +0.6 5,501,346 + AO353_24940 0.63 +0.2 5,501,346 + AO353_24940 0.63 -2.5 5,501,346 + AO353_24940 0.63 +0.1 5,501,346 + AO353_24940 0.63 -0.5 5,501,346 + AO353_24940 0.63 +0.2 5,501,346 + AO353_24940 0.63 +0.1 5,501,347 - AO353_24940 0.63 -2.4 5,501,347 - AO353_24940 0.63 -0.1 5,501,347 - AO353_24940 0.63 +1.1 5,501,347 - +1.1 5,501,347 - AO353_24940 0.63 -0.3 5,501,347 - AO353_24940 0.63 +1.8 5,501,347 - AO353_24940 0.63 -3.0 5,501,347 - AO353_24940 0.63 -0.5 5,501,515 + -0.5 5,501,515 + -1.2 5,501,515 + +0.2 5,501,515 + -0.5 5,501,516 - +0.5 5,501,538 - +0.5 5,501,550 + +0.5 5,501,767 + -0.5 5,501,819 - +0.1 5,502,086 - AO353_24945 0.49 -0.3 5,502,086 - AO353_24945 0.49 -1.5 5,502,130 + AO353_24945 0.58 -0.2 5,502,130 + AO353_24945 0.58 -0.4 5,502,131 - AO353_24945 0.58 -2.1 5,502,131 - AO353_24945 0.58 -1.5 5,502,131 - AO353_24945 0.58 -1.5 5,502,238 + AO353_24945 0.78 +1.1 5,502,238 + AO353_24945 0.78 +0.2 5,502,239 - AO353_24945 0.78 +0.5 5,502,239 - AO353_24945 0.78 +2.7 5,502,239 - AO353_24945 0.78 +1.1 5,502,239 - AO353_24945 0.78 +0.9 5,502,239 - AO353_24945 0.78 +0.3
Or see this region's nucleotide sequence