Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4606 and Pf6N2E2_4607 are separated by 24 nucleotides Pf6N2E2_4607 and Pf6N2E2_4608 are separated by 85 nucleotides Pf6N2E2_4608 and Pf6N2E2_4609 overlap by 1 nucleotides
Pf6N2E2_4606 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 5,331,787 to 5,332,791
_4606
Pf6N2E2_4607 - Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR, at 5,332,816 to 5,333,322
_4607
Pf6N2E2_4608 - Putative Holliday junction resolvase YggF, at 5,333,408 to 5,333,845
_4608
Pf6N2E2_4609 - UPF0301 protein YqgE, at 5,333,845 to 5,334,414
_4609
Position (kb)
5332
5333
5334 Strain fitness (log2 ratio)
-1
0
1
2 at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.818 kb on - strand at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.136 kb on - strand, within Pf6N2E2_4607 at 5333.232 kb on - strand, within Pf6N2E2_4607 at 5333.232 kb on - strand, within Pf6N2E2_4607 at 5333.232 kb on - strand, within Pf6N2E2_4607 at 5333.368 kb on - strand at 5333.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 5,332,806 - +1.5 5,332,806 - +1.4 5,332,806 - -0.4 5,332,806 - -0.1 5,332,806 - -0.3 5,332,806 - +1.9 5,332,806 - +1.8 5,332,818 - -1.1 5,333,036 - Pf6N2E2_4607 0.43 +2.4 5,333,036 - Pf6N2E2_4607 0.43 +1.6 5,333,036 - Pf6N2E2_4607 0.43 +2.4 5,333,036 - Pf6N2E2_4607 0.43 +2.1 5,333,036 - Pf6N2E2_4607 0.43 +1.7 5,333,136 - Pf6N2E2_4607 0.63 +0.8 5,333,232 - Pf6N2E2_4607 0.82 +1.1 5,333,232 - Pf6N2E2_4607 0.82 +2.1 5,333,232 - Pf6N2E2_4607 0.82 +2.6 5,333,368 - +0.6 5,333,374 - +2.0
Or see this region's nucleotide sequence