Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1708 and Dsui_1709 are separated by 16 nucleotides Dsui_1709 and Dsui_1710 are separated by 70 nucleotides Dsui_1710 and Dsui_1711 are separated by 72 nucleotides Dsui_1711 and Dsui_1712 overlap by 26 nucleotides
Dsui_1708: Dsui_1708 - chemotaxis protein histidine kinase-like protein, at 1,794,418 to 1,796,877
_1708
Dsui_1709: Dsui_1709 - chemotaxis signal transduction protein, at 1,796,894 to 1,797,397
_1709
Dsui_1710: Dsui_1710 - PAS domain S-box, at 1,797,468 to 1,800,335
_1710
Dsui_1711: Dsui_1711 - methylase of chemotaxis methyl-accepting protein, at 1,800,408 to 1,801,286
_1711
Dsui_1712: Dsui_1712 - chemotaxis protein, at 1,801,261 to 1,801,908
_1712
Position (kb)
1797
1798
1799
1800
1801 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1796.538 kb on + strand, within Dsui_1708 at 1796.590 kb on - strand at 1796.643 kb on - strand at 1796.672 kb on + strand at 1796.680 kb on - strand at 1796.681 kb on + strand at 1796.710 kb on + strand at 1796.741 kb on - strand at 1796.749 kb on - strand at 1796.764 kb on + strand at 1796.809 kb on + strand at 1796.958 kb on + strand, within Dsui_1709 at 1796.966 kb on - strand, within Dsui_1709 at 1796.983 kb on - strand at 1797.125 kb on - strand, within Dsui_1709 at 1797.135 kb on - strand, within Dsui_1709 at 1797.147 kb on + strand, within Dsui_1709 at 1797.183 kb on + strand, within Dsui_1709 at 1797.233 kb on - strand at 1797.341 kb on - strand at 1797.351 kb on - strand at 1797.351 kb on - strand at 1797.394 kb on - strand at 1797.399 kb on - strand at 1797.476 kb on - strand at 1797.501 kb on - strand at 1797.557 kb on - strand at 1797.609 kb on - strand at 1797.671 kb on + strand at 1797.679 kb on - strand at 1797.698 kb on + strand at 1797.760 kb on + strand, within Dsui_1710 at 1797.797 kb on + strand, within Dsui_1710 at 1798.072 kb on - strand, within Dsui_1710 at 1798.137 kb on - strand, within Dsui_1710 at 1798.206 kb on + strand, within Dsui_1710 at 1798.229 kb on + strand, within Dsui_1710 at 1798.297 kb on - strand, within Dsui_1710 at 1798.298 kb on - strand, within Dsui_1710 at 1798.366 kb on + strand, within Dsui_1710 at 1798.374 kb on - strand, within Dsui_1710 at 1798.415 kb on + strand, within Dsui_1710 at 1798.418 kb on - strand, within Dsui_1710 at 1798.466 kb on + strand, within Dsui_1710 at 1798.620 kb on - strand, within Dsui_1710 at 1798.730 kb on + strand, within Dsui_1710 at 1798.787 kb on + strand, within Dsui_1710 at 1798.906 kb on + strand, within Dsui_1710 at 1799.055 kb on - strand, within Dsui_1710 at 1799.113 kb on + strand, within Dsui_1710 at 1799.423 kb on + strand, within Dsui_1710 at 1799.431 kb on - strand, within Dsui_1710 at 1799.431 kb on - strand, within Dsui_1710 at 1799.431 kb on - strand, within Dsui_1710 at 1799.505 kb on + strand, within Dsui_1710 at 1799.510 kb on + strand, within Dsui_1710 at 1799.526 kb on - strand, within Dsui_1710 at 1800.004 kb on + strand, within Dsui_1710 at 1800.004 kb on + strand, within Dsui_1710 at 1800.012 kb on - strand, within Dsui_1710 at 1800.296 kb on - strand at 1800.329 kb on + strand at 1800.413 kb on - strand at 1800.627 kb on - strand at 1800.724 kb on - strand at 1800.734 kb on - strand at 1800.739 kb on + strand, within Dsui_1711 at 1800.845 kb on - strand, within Dsui_1711 at 1800.959 kb on + strand, within Dsui_1711 at 1800.967 kb on - strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1801.007 kb on - strand, within Dsui_1711 at 1801.193 kb on - strand, within Dsui_1711 at 1801.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,796,538 + Dsui_1708 0.86 +0.1 1,796,590 - +1.4 1,796,643 - -0.1 1,796,672 + -0.1 1,796,680 - +1.1 1,796,681 + +0.5 1,796,710 + +1.0 1,796,741 - -1.1 1,796,749 - +0.6 1,796,764 + +0.2 1,796,809 + +0.1 1,796,958 + Dsui_1709 0.13 -0.0 1,796,966 - Dsui_1709 0.14 -1.1 1,796,983 - +1.9 1,797,125 - Dsui_1709 0.46 +0.3 1,797,135 - Dsui_1709 0.48 +0.6 1,797,147 + Dsui_1709 0.50 +0.5 1,797,183 + Dsui_1709 0.57 +0.3 1,797,233 - +1.5 1,797,341 - +1.9 1,797,351 - +1.9 1,797,351 - -0.6 1,797,394 - +1.4 1,797,399 - +0.9 1,797,476 - +0.9 1,797,501 - -0.6 1,797,557 - +0.4 1,797,609 - +0.9 1,797,671 + +0.3 1,797,679 - +0.7 1,797,698 + +0.3 1,797,760 + Dsui_1710 0.10 -1.4 1,797,797 + Dsui_1710 0.11 +0.9 1,798,072 - Dsui_1710 0.21 +1.2 1,798,137 - Dsui_1710 0.23 +0.4 1,798,206 + Dsui_1710 0.26 +0.1 1,798,229 + Dsui_1710 0.27 +1.1 1,798,297 - Dsui_1710 0.29 +0.6 1,798,298 - Dsui_1710 0.29 +0.3 1,798,366 + Dsui_1710 0.31 -0.2 1,798,374 - Dsui_1710 0.32 +0.2 1,798,415 + Dsui_1710 0.33 +0.3 1,798,418 - Dsui_1710 0.33 +0.8 1,798,466 + Dsui_1710 0.35 +0.6 1,798,620 - Dsui_1710 0.40 -0.7 1,798,730 + Dsui_1710 0.44 -1.8 1,798,787 + Dsui_1710 0.46 +0.5 1,798,906 + Dsui_1710 0.50 +0.0 1,799,055 - Dsui_1710 0.55 -0.5 1,799,113 + Dsui_1710 0.57 +0.5 1,799,423 + Dsui_1710 0.68 +0.0 1,799,431 - Dsui_1710 0.68 +0.2 1,799,431 - Dsui_1710 0.68 +0.1 1,799,431 - Dsui_1710 0.68 +1.8 1,799,505 + Dsui_1710 0.71 +0.5 1,799,510 + Dsui_1710 0.71 -0.1 1,799,526 - Dsui_1710 0.72 +0.4 1,800,004 + Dsui_1710 0.88 -0.0 1,800,004 + Dsui_1710 0.88 +0.1 1,800,012 - Dsui_1710 0.89 -0.4 1,800,296 - -0.4 1,800,329 + +0.3 1,800,413 - +0.4 1,800,627 - +2.0 1,800,724 - +0.4 1,800,734 - -0.0 1,800,739 + Dsui_1711 0.38 +0.3 1,800,845 - Dsui_1711 0.50 +0.3 1,800,959 + Dsui_1711 0.63 +0.1 1,800,967 - Dsui_1711 0.64 +0.2 1,800,999 + Dsui_1711 0.67 -0.0 1,800,999 + Dsui_1711 0.67 +0.4 1,800,999 + Dsui_1711 0.67 +0.4 1,800,999 + Dsui_1711 0.67 +2.0 1,801,007 - Dsui_1711 0.68 +0.4 1,801,193 - Dsui_1711 0.89 -0.2 1,801,267 - +0.4
Or see this region's nucleotide sequence