Strain Fitness in Dechlorosoma suillum PS around Dsui_1710

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1708 and Dsui_1709 are separated by 16 nucleotidesDsui_1709 and Dsui_1710 are separated by 70 nucleotidesDsui_1710 and Dsui_1711 are separated by 72 nucleotidesDsui_1711 and Dsui_1712 overlap by 26 nucleotides Dsui_1708: Dsui_1708 - chemotaxis protein histidine kinase-like protein, at 1,794,418 to 1,796,877 _1708 Dsui_1709: Dsui_1709 - chemotaxis signal transduction protein, at 1,796,894 to 1,797,397 _1709 Dsui_1710: Dsui_1710 - PAS domain S-box, at 1,797,468 to 1,800,335 _1710 Dsui_1711: Dsui_1711 - methylase of chemotaxis methyl-accepting protein, at 1,800,408 to 1,801,286 _1711 Dsui_1712: Dsui_1712 - chemotaxis protein, at 1,801,261 to 1,801,908 _1712 Position (kb) 1797 1798 1799 1800 1801Strain fitness (log2 ratio) -2 -1 0 1 2at 1796.538 kb on + strand, within Dsui_1708at 1796.590 kb on - strandat 1796.643 kb on - strandat 1796.672 kb on + strandat 1796.680 kb on - strandat 1796.681 kb on + strandat 1796.710 kb on + strandat 1796.741 kb on - strandat 1796.749 kb on - strandat 1796.764 kb on + strandat 1796.809 kb on + strandat 1796.958 kb on + strand, within Dsui_1709at 1796.966 kb on - strand, within Dsui_1709at 1796.983 kb on - strandat 1797.125 kb on - strand, within Dsui_1709at 1797.135 kb on - strand, within Dsui_1709at 1797.147 kb on + strand, within Dsui_1709at 1797.183 kb on + strand, within Dsui_1709at 1797.233 kb on - strandat 1797.341 kb on - strandat 1797.351 kb on - strandat 1797.351 kb on - strandat 1797.394 kb on - strandat 1797.399 kb on - strandat 1797.476 kb on - strandat 1797.501 kb on - strandat 1797.557 kb on - strandat 1797.609 kb on - strandat 1797.671 kb on + strandat 1797.679 kb on - strandat 1797.698 kb on + strandat 1797.760 kb on + strand, within Dsui_1710at 1797.797 kb on + strand, within Dsui_1710at 1798.072 kb on - strand, within Dsui_1710at 1798.137 kb on - strand, within Dsui_1710at 1798.206 kb on + strand, within Dsui_1710at 1798.229 kb on + strand, within Dsui_1710at 1798.297 kb on - strand, within Dsui_1710at 1798.298 kb on - strand, within Dsui_1710at 1798.366 kb on + strand, within Dsui_1710at 1798.374 kb on - strand, within Dsui_1710at 1798.415 kb on + strand, within Dsui_1710at 1798.418 kb on - strand, within Dsui_1710at 1798.466 kb on + strand, within Dsui_1710at 1798.620 kb on - strand, within Dsui_1710at 1798.730 kb on + strand, within Dsui_1710at 1798.787 kb on + strand, within Dsui_1710at 1798.906 kb on + strand, within Dsui_1710at 1799.055 kb on - strand, within Dsui_1710at 1799.113 kb on + strand, within Dsui_1710at 1799.423 kb on + strand, within Dsui_1710at 1799.431 kb on - strand, within Dsui_1710at 1799.431 kb on - strand, within Dsui_1710at 1799.431 kb on - strand, within Dsui_1710at 1799.505 kb on + strand, within Dsui_1710at 1799.510 kb on + strand, within Dsui_1710at 1799.526 kb on - strand, within Dsui_1710at 1800.004 kb on + strand, within Dsui_1710at 1800.004 kb on + strand, within Dsui_1710at 1800.012 kb on - strand, within Dsui_1710at 1800.296 kb on - strandat 1800.329 kb on + strandat 1800.413 kb on - strandat 1800.627 kb on - strandat 1800.724 kb on - strandat 1800.734 kb on - strandat 1800.739 kb on + strand, within Dsui_1711at 1800.845 kb on - strand, within Dsui_1711at 1800.959 kb on + strand, within Dsui_1711at 1800.967 kb on - strand, within Dsui_1711at 1800.999 kb on + strand, within Dsui_1711at 1800.999 kb on + strand, within Dsui_1711at 1800.999 kb on + strand, within Dsui_1711at 1800.999 kb on + strand, within Dsui_1711at 1801.007 kb on - strand, within Dsui_1711at 1801.193 kb on - strand, within Dsui_1711at 1801.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,796,538 + Dsui_1708 0.86 +0.1
1,796,590 - +1.4
1,796,643 - -0.1
1,796,672 + -0.1
1,796,680 - +1.1
1,796,681 + +0.5
1,796,710 + +1.0
1,796,741 - -1.1
1,796,749 - +0.6
1,796,764 + +0.2
1,796,809 + +0.1
1,796,958 + Dsui_1709 0.13 -0.0
1,796,966 - Dsui_1709 0.14 -1.1
1,796,983 - +1.9
1,797,125 - Dsui_1709 0.46 +0.3
1,797,135 - Dsui_1709 0.48 +0.6
1,797,147 + Dsui_1709 0.50 +0.5
1,797,183 + Dsui_1709 0.57 +0.3
1,797,233 - +1.5
1,797,341 - +1.9
1,797,351 - +1.9
1,797,351 - -0.6
1,797,394 - +1.4
1,797,399 - +0.9
1,797,476 - +0.9
1,797,501 - -0.6
1,797,557 - +0.4
1,797,609 - +0.9
1,797,671 + +0.3
1,797,679 - +0.7
1,797,698 + +0.3
1,797,760 + Dsui_1710 0.10 -1.4
1,797,797 + Dsui_1710 0.11 +0.9
1,798,072 - Dsui_1710 0.21 +1.2
1,798,137 - Dsui_1710 0.23 +0.4
1,798,206 + Dsui_1710 0.26 +0.1
1,798,229 + Dsui_1710 0.27 +1.1
1,798,297 - Dsui_1710 0.29 +0.6
1,798,298 - Dsui_1710 0.29 +0.3
1,798,366 + Dsui_1710 0.31 -0.2
1,798,374 - Dsui_1710 0.32 +0.2
1,798,415 + Dsui_1710 0.33 +0.3
1,798,418 - Dsui_1710 0.33 +0.8
1,798,466 + Dsui_1710 0.35 +0.6
1,798,620 - Dsui_1710 0.40 -0.7
1,798,730 + Dsui_1710 0.44 -1.8
1,798,787 + Dsui_1710 0.46 +0.5
1,798,906 + Dsui_1710 0.50 +0.0
1,799,055 - Dsui_1710 0.55 -0.5
1,799,113 + Dsui_1710 0.57 +0.5
1,799,423 + Dsui_1710 0.68 +0.0
1,799,431 - Dsui_1710 0.68 +0.2
1,799,431 - Dsui_1710 0.68 +0.1
1,799,431 - Dsui_1710 0.68 +1.8
1,799,505 + Dsui_1710 0.71 +0.5
1,799,510 + Dsui_1710 0.71 -0.1
1,799,526 - Dsui_1710 0.72 +0.4
1,800,004 + Dsui_1710 0.88 -0.0
1,800,004 + Dsui_1710 0.88 +0.1
1,800,012 - Dsui_1710 0.89 -0.4
1,800,296 - -0.4
1,800,329 + +0.3
1,800,413 - +0.4
1,800,627 - +2.0
1,800,724 - +0.4
1,800,734 - -0.0
1,800,739 + Dsui_1711 0.38 +0.3
1,800,845 - Dsui_1711 0.50 +0.3
1,800,959 + Dsui_1711 0.63 +0.1
1,800,967 - Dsui_1711 0.64 +0.2
1,800,999 + Dsui_1711 0.67 -0.0
1,800,999 + Dsui_1711 0.67 +0.4
1,800,999 + Dsui_1711 0.67 +0.4
1,800,999 + Dsui_1711 0.67 +2.0
1,801,007 - Dsui_1711 0.68 +0.4
1,801,193 - Dsui_1711 0.89 -0.2
1,801,267 - +0.4

Or see this region's nucleotide sequence