Strain Fitness in Dechlorosoma suillum PS around Dsui_2964

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2963 and Dsui_2964 are separated by 3 nucleotidesDsui_2964 and Dsui_2965 are separated by 28 nucleotidesDsui_2965 and Dsui_2966 overlap by 4 nucleotides Dsui_2963: Dsui_2963 - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit,precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit, at 3,170,916 to 3,172,208 _2963 Dsui_2964: Dsui_2964 - precorrin-2 C20-methyltransferase, at 3,172,212 to 3,173,012 _2964 Dsui_2965: Dsui_2965 - cobalamin biosynthesis protein CbiG, at 3,173,041 to 3,173,826 _2965 Dsui_2966: Dsui_2966 - cobalamin biosynthesis protein CbiG, at 3,173,823 to 3,174,230 _2966 Position (kb) 3172 3173 3174Strain fitness (log2 ratio) -1 0 1 2at 3171.217 kb on - strandat 3171.324 kb on - strandat 3171.566 kb on - strand, within Dsui_2963at 3171.580 kb on + strand, within Dsui_2963at 3171.737 kb on + strand, within Dsui_2963at 3171.806 kb on + strand, within Dsui_2963at 3171.806 kb on + strand, within Dsui_2963at 3171.814 kb on - strand, within Dsui_2963at 3172.068 kb on + strand, within Dsui_2963at 3172.129 kb on + strandat 3172.210 kb on - strandat 3172.359 kb on - strand, within Dsui_2964at 3172.381 kb on + strand, within Dsui_2964at 3172.498 kb on + strand, within Dsui_2964at 3172.603 kb on - strandat 3172.668 kb on + strand, within Dsui_2964at 3172.808 kb on + strand, within Dsui_2964at 3172.914 kb on - strand, within Dsui_2964at 3173.016 kb on + strandat 3173.501 kb on + strand, within Dsui_2965at 3173.693 kb on - strandat 3173.707 kb on + strand, within Dsui_2965at 3173.710 kb on - strand, within Dsui_2965at 3173.829 kb on - strandat 3173.940 kb on - strandat 3173.965 kb on + strand, within Dsui_2966at 3173.965 kb on + strand, within Dsui_2966

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,171,217 - +2.3
3,171,324 - +0.3
3,171,566 - Dsui_2963 0.50 +0.8
3,171,580 + Dsui_2963 0.51 -0.1
3,171,737 + Dsui_2963 0.63 -0.4
3,171,806 + Dsui_2963 0.69 -1.2
3,171,806 + Dsui_2963 0.69 +0.3
3,171,814 - Dsui_2963 0.69 +0.8
3,172,068 + Dsui_2963 0.89 -0.0
3,172,129 + -1.0
3,172,210 - +0.8
3,172,359 - Dsui_2964 0.18 +0.0
3,172,381 + Dsui_2964 0.21 -1.2
3,172,498 + Dsui_2964 0.36 +0.1
3,172,603 - +2.3
3,172,668 + Dsui_2964 0.57 -0.2
3,172,808 + Dsui_2964 0.74 -0.9
3,172,914 - Dsui_2964 0.88 -0.8
3,173,016 + +0.8
3,173,501 + Dsui_2965 0.59 +0.6
3,173,693 - +1.3
3,173,707 + Dsui_2965 0.85 +0.7
3,173,710 - Dsui_2965 0.85 -0.1
3,173,829 - -0.2
3,173,940 - +1.3
3,173,965 + Dsui_2966 0.35 +0.5
3,173,965 + Dsui_2966 0.35 -0.2

Or see this region's nucleotide sequence