Strain Fitness in Shewanella amazonensis SB2B around Sama_2557

Experiment: LB rep2 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep2 t1
3,063,679	-		Sama_2556	0.30	+0.6
3,063,680	+		Sama_2556	0.30	+1.2
3,063,680	+		Sama_2556	0.30	+0.6
3,063,680	+		Sama_2556	0.30	+0.8
3,063,680	+		Sama_2556	0.30	+1.2
3,063,680	+		Sama_2556	0.30	-0.1
3,063,680	+		Sama_2556	0.30	+0.4
3,063,680	+		Sama_2556	0.30	-0.7
3,063,680	+		Sama_2556	0.30	-1.1
3,063,680	+		Sama_2556	0.30	-0.9
3,063,680	+		Sama_2556	0.30	+0.1
3,063,680	+		Sama_2556	0.30	+0.2
3,063,680	+		Sama_2556	0.30	-0.1
3,063,680	+		Sama_2556	0.30	-0.7
3,063,680	+		Sama_2556	0.30	+0.9
3,063,680	+		Sama_2556	0.30	+0.5
3,063,680	+		Sama_2556	0.30	-0.1
3,063,681	-		Sama_2556	0.30	-0.4
3,063,681	-		Sama_2556	0.30	+0.0
3,063,681	-		Sama_2556	0.30	-0.4
3,063,681	-		Sama_2556	0.30	+0.6
3,063,681	-		Sama_2556	0.30	+0.2
3,063,681	-		Sama_2556	0.30	+1.7
3,063,681	-		Sama_2556	0.30	-1.7
3,063,683	+		Sama_2556	0.30	+0.1
3,063,683	+		Sama_2556	0.30	-0.7
3,063,683	+		Sama_2556	0.30	-0.8
3,063,683	+		Sama_2556	0.30	+1.5
3,063,683	+		Sama_2556	0.30	-0.8
3,063,683	+		Sama_2556	0.30	+0.9
3,063,683	+		Sama_2556	0.30	+1.9
3,063,684	-		Sama_2556	0.30	+0.9
3,063,684	-		Sama_2556	0.30	+1.8
3,063,684	-		Sama_2556	0.30	+0.9
3,063,686	+		Sama_2556	0.30	-0.1
3,063,686	+		Sama_2556	0.30	-0.9
3,063,686	+		Sama_2556	0.30	-0.1
3,063,686	+		Sama_2556	0.30	-0.4
3,063,686	+		Sama_2556	0.30	+0.1
3,063,686	+		Sama_2556	0.30	-0.4
3,063,686	+		Sama_2556	0.30	+0.3
3,063,686	+		Sama_2556	0.30	-0.5
3,063,686	+		Sama_2556	0.30	+0.6
3,063,686	+		Sama_2556	0.30	-0.5
3,063,686	+		Sama_2556	0.30	-1.1
3,063,686	+		Sama_2556	0.30	+0.9
3,063,686	+		Sama_2556	0.30	-0.7
3,063,686	+		Sama_2556	0.30	-0.1
3,063,686	+		Sama_2556	0.30	+1.7
3,063,686	+		Sama_2556	0.30	-1.4
3,063,686	+		Sama_2556	0.30	-0.1
3,063,686	+		Sama_2556	0.30	+1.1
3,063,686	+		Sama_2556	0.30	-0.5
3,063,686	+		Sama_2556	0.30	+1.5
3,063,687	-		Sama_2556	0.30	+0.5
3,063,687	-		Sama_2556	0.30	+0.1
3,063,687	-		Sama_2556	0.30	+1.6
3,063,687	-		Sama_2556	0.30	-0.4
3,063,687	-		Sama_2556	0.30	-0.1
3,063,687	-		Sama_2556	0.30	+0.8
3,063,687	-		Sama_2556	0.30	-0.9
3,063,687	-		Sama_2556	0.30	-0.5
3,063,687	-		Sama_2556	0.30	+0.2
3,063,687	-		Sama_2556	0.30	-0.5
3,063,745	+		Sama_2556	0.34	-0.1
3,063,859	+		Sama_2556	0.42	+0.6
3,063,859	+		Sama_2556	0.42	-0.4
3,063,859	+		Sama_2556	0.42	+0.0
3,063,859	+		Sama_2556	0.42	-0.5
3,063,859	+		Sama_2556	0.42	+0.7
3,063,859	+		Sama_2556	0.42	+0.4
3,063,860	-		Sama_2556	0.42	+0.9
3,063,860	-		Sama_2556	0.42	+1.5
3,063,860	-		Sama_2556	0.42	-0.1
3,063,860	-		Sama_2556	0.42	+1.5
3,063,860	-		Sama_2556	0.42	+1.5
3,063,860	-		Sama_2556	0.42	+0.9
3,063,860	-		Sama_2556	0.42	-0.4
3,063,861	+		Sama_2556	0.43	+0.4
3,063,861	+		Sama_2556	0.43	-0.1
3,063,861	+		Sama_2556	0.43	+0.1
3,063,861	+		Sama_2556	0.43	-0.1
3,063,861	+		Sama_2556	0.43	+1.2
3,063,861	+		Sama_2556	0.43	+0.3
3,063,861	+		Sama_2556	0.43	+0.0
3,063,861	+		Sama_2556	0.43	-0.0
3,063,861	+		Sama_2556	0.43	+1.5
3,063,861	+		Sama_2556	0.43	-0.1
3,063,862	-		Sama_2556	0.43	+0.6
3,063,862	-		Sama_2556	0.43	-0.4
3,063,862	-		Sama_2556	0.43	-0.9
3,063,862	-		Sama_2556	0.43	-0.7
3,063,862	-		Sama_2556	0.43	-2.1
3,063,862	-		Sama_2556	0.43	+0.6
3,063,862	-		Sama_2556	0.43	+1.0
3,063,862	-		Sama_2556	0.43	+0.5
3,063,862	-		Sama_2556	0.43	-0.5
3,063,896	+		Sama_2556	0.45	+0.8
3,063,985	+		Sama_2556	0.51	+0.3
3,064,021	+		Sama_2556	0.54	+0.8
3,064,021	+		Sama_2556	0.54	+0.1
3,064,021	+		Sama_2556	0.54	-0.1
3,064,021	+		Sama_2556	0.54	-0.4
3,064,021	+		Sama_2556	0.54	-0.1
3,064,021	+		Sama_2556	0.54	+0.9
3,064,021	+		Sama_2556	0.54	+0.4
3,064,022	-		Sama_2556	0.54	-0.1
3,064,022	-		Sama_2556	0.54	+0.9
3,064,022	-		Sama_2556	0.54	-1.0
3,064,022	-		Sama_2556	0.54	+0.8
3,064,022	-		Sama_2556	0.54	-0.1
3,064,022	-		Sama_2556	0.54	+1.5
3,064,022	-		Sama_2556	0.54	+0.5
3,064,106	-		Sama_2556	0.60	+0.5
3,064,121	+		Sama_2556	0.61	+0.4
3,064,121	+		Sama_2556	0.61	-0.1
3,064,121	+		Sama_2556	0.61	-0.7
3,064,121	+		Sama_2556	0.61	-0.7
3,064,121	+		Sama_2556	0.61	+0.1
3,064,121	+		Sama_2556	0.61	+0.0
3,064,121	+		Sama_2556	0.61	+2.2
3,064,121	+		Sama_2556	0.61	-0.0
3,064,121	+		Sama_2556	0.61	-0.1
3,064,121	+		Sama_2556	0.61	+0.9
3,064,121	+		Sama_2556	0.61	+0.5
3,064,121	+		Sama_2556	0.61	-2.1
3,064,122	-		Sama_2556	0.61	-0.2
3,064,122	-		Sama_2556	0.61	+0.7
3,064,122	-		Sama_2556	0.61	+0.3
3,064,122	-		Sama_2556	0.61	-0.1
3,064,122	-		Sama_2556	0.61	-1.1
3,064,122	-		Sama_2556	0.61	+0.2
3,064,122	-		Sama_2556	0.61	+0.9
3,064,122	-		Sama_2556	0.61	-0.7
3,064,122	-		Sama_2556	0.61	-1.1
3,064,122	-		Sama_2556	0.61	-1.0
3,064,122	-		Sama_2556	0.61	+0.6
3,064,122	-		Sama_2556	0.61	+0.5
3,064,122	-		Sama_2556	0.61	+0.7
3,064,122	-		Sama_2556	0.61	-0.1
3,064,134	+		Sama_2556	0.62	-0.1
3,064,150	+		Sama_2556	0.63	-1.1
3,064,150	+		Sama_2556	0.63	-0.5
3,064,150	+		Sama_2556	0.63	+0.9
3,064,151	-		Sama_2556	0.63	+0.2
3,064,151	-		Sama_2556	0.63	+0.8
3,064,151	-		Sama_2556	0.63	-0.4
3,064,202	-		Sama_2556	0.67	+0.4
3,064,202	-		Sama_2556	0.67	+0.1
3,064,202	-		Sama_2556	0.67	-1.1
3,064,209	+		Sama_2556	0.67	+0.8
3,064,244	+		Sama_2556	0.70	-0.1
3,064,244	+		Sama_2556	0.70	-1.1
3,064,244	+		Sama_2556	0.70	-0.5
3,064,244	+		Sama_2556	0.70	-0.1
3,064,258	+		Sama_2556	0.71	+1.5
3,064,258	+		Sama_2556	0.71	+0.0
3,064,342	+		Sama_2556	0.77	+0.1
3,064,342	+		Sama_2556	0.77	+1.2
3,064,342	+		Sama_2556	0.77	+0.4
3,064,376	+		Sama_2556	0.79	-1.3
3,064,376	+		Sama_2556	0.79	+0.9
3,064,377	-		Sama_2556	0.79	+0.4
3,064,377	-		Sama_2556	0.79	+1.7
3,064,377	-		Sama_2556	0.79	-0.1
3,064,377	-		Sama_2556	0.79	-0.1
3,064,377	-		Sama_2556	0.79	+0.2
3,064,380	+		Sama_2556	0.80	+0.1
3,064,380	+		Sama_2556	0.80	+0.3
3,064,380	+		Sama_2556	0.80	-0.1
3,064,381	-		Sama_2556	0.80	-1.1
3,064,381	-		Sama_2556	0.80	+0.7
3,064,381	-		Sama_2556	0.80	+0.4
3,064,381	-		Sama_2556	0.80	-0.1
3,064,421	-		Sama_2556	0.83	+2.2
3,064,463	-		Sama_2556	0.86	-2.1
3,064,463	-		Sama_2556	0.86	+0.5
3,064,503	+		Sama_2556	0.88	+0.6
3,064,503	+		Sama_2556	0.88	-1.0
3,064,504	-		Sama_2556	0.88	+0.1
3,064,544	-				-0.5
3,064,581	-				+0.1
3,064,598	+				+2.2
3,064,598	+				+0.3
3,064,598	+				+0.9
3,064,675	+				+0.6
3,064,675	+				+1.5
3,064,676	-				-0.5
3,064,676	-				+1.5
3,064,742	-		Sama_2557	0.13	+0.1
3,064,742	-		Sama_2557	0.13	-0.5
3,064,828	+		Sama_2557	0.31	-0.9
3,064,828	+		Sama_2557	0.31	-1.7
3,064,828	+		Sama_2557	0.31	+0.2
3,064,865	+		Sama_2557	0.38	-0.1
3,064,866	-		Sama_2557	0.38	-0.7
3,064,866	-		Sama_2557	0.38	-0.4
3,064,866	-		Sama_2557	0.38	-1.1
3,064,917	-		Sama_2557	0.49	+0.4
3,065,035	+		Sama_2557	0.73	+0.9
3,065,036	-		Sama_2557	0.73	-0.5
3,065,036	-		Sama_2557	0.73	-0.1
3,065,055	+		Sama_2557	0.77	-0.5
3,065,056	-		Sama_2557	0.78	-0.5
3,065,056	-		Sama_2557	0.78	+0.9
3,065,056	-		Sama_2557	0.78	-0.1
3,065,149	+				+1.9
3,065,150	-				+1.5
3,065,150	-				-0.1
3,065,150	-				+0.3
3,065,150	-				-0.9
3,065,228	+				-0.9
3,065,229	-				+0.1
3,065,233	+				+1.5
3,065,233	+				+0.9
3,065,233	+				-0.1
3,065,234	-				+0.9
3,065,234	-				+0.2
3,065,234	-				+0.0
3,065,234	-				+0.2
3,065,290	+				+0.3
3,065,339	+				-0.1
3,065,413	+		Sama_2558	0.14	-0.1
3,065,413	+		Sama_2558	0.14	-0.9
3,065,413	+		Sama_2558	0.14	-0.5
3,065,423	+		Sama_2558	0.17	-0.9
3,065,543	+		Sama_2558	0.50	+0.7
3,065,543	+		Sama_2558	0.50	-1.3
3,065,543	+		Sama_2558	0.50	-0.7
3,065,543	+		Sama_2558	0.50	-0.5
3,065,543	+		Sama_2558	0.50	+1.5
3,065,543	+		Sama_2558	0.50	+0.2
3,065,684	+		Sama_2558	0.88	+2.0
3,065,684	+		Sama_2558	0.88	-0.4
3,065,684	+		Sama_2558	0.88	+0.2
3,065,684	+		Sama_2558	0.88	-0.1
3,065,686	+		Sama_2558	0.89	-2.1
3,065,686	+		Sama_2558	0.89	+2.5
3,065,686	+		Sama_2558	0.89	+1.6
3,065,689	+				-0.6
3,065,689	+				+0.2
3,065,689	+				-0.1
3,065,689	+				+1.1
3,065,693	+				+0.1