Strain Fitness in Shewanella amazonensis SB2B around Sama_0971

Experiment: Cytidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine
1,173,053	+				+0.6
1,173,054	-				+1.0
1,173,182	+		Sama_0970	0.13	-1.0
1,173,255	+		Sama_0970	0.22	-0.4
1,173,255	+		Sama_0970	0.22	+0.9
1,173,255	+		Sama_0970	0.22	+0.2
1,173,255	+		Sama_0970	0.22	-1.0
1,173,255	+		Sama_0970	0.22	+0.8
1,173,255	+		Sama_0970	0.22	+0.9
1,173,255	+		Sama_0970	0.22	-0.1
1,173,255	+		Sama_0970	0.22	+0.7
1,173,256	-		Sama_0970	0.22	+1.7
1,173,256	-		Sama_0970	0.22	+1.8
1,173,256	-		Sama_0970	0.22	+1.3
1,173,291	+		Sama_0970	0.26	+0.2
1,173,292	-		Sama_0970	0.27	+0.5
1,173,319	+		Sama_0970	0.30	-0.8
1,173,328	+		Sama_0970	0.31	+0.1
1,173,359	+		Sama_0970	0.35	-0.1
1,173,359	+		Sama_0970	0.35	-0.7
1,173,359	+		Sama_0970	0.35	-1.2
1,173,359	+		Sama_0970	0.35	-1.1
1,173,359	+		Sama_0970	0.35	-0.3
1,173,360	-		Sama_0970	0.35	+0.5
1,173,360	-		Sama_0970	0.35	+1.1
1,173,407	+		Sama_0970	0.41	+1.3
1,173,411	-		Sama_0970	0.42	+1.1
1,173,437	-		Sama_0970	0.45	-0.3
1,173,488	+		Sama_0970	0.52	-0.1
1,173,494	+		Sama_0970	0.52	-0.7
1,173,495	-		Sama_0970	0.52	+2.4
1,173,495	-		Sama_0970	0.52	+1.2
1,173,556	+		Sama_0970	0.60	+0.6
1,173,556	+		Sama_0970	0.60	+1.8
1,173,556	+		Sama_0970	0.60	+0.3
1,173,556	+		Sama_0970	0.60	-0.4
1,173,556	+		Sama_0970	0.60	+0.8
1,173,556	+		Sama_0970	0.60	+0.2
1,173,556	+		Sama_0970	0.60	+0.6
1,173,556	+		Sama_0970	0.60	+0.6
1,173,556	+		Sama_0970	0.60	+0.4
1,173,556	+		Sama_0970	0.60	+2.1
1,173,557	-		Sama_0970	0.60	+1.2
1,173,557	-		Sama_0970	0.60	-0.1
1,173,557	-		Sama_0970	0.60	+0.6
1,173,557	-		Sama_0970	0.60	+0.5
1,173,557	-		Sama_0970	0.60	-1.9
1,173,557	-		Sama_0970	0.60	+1.2
1,173,584	-		Sama_0970	0.64	+1.1
1,173,595	-		Sama_0970	0.65	+0.2
1,173,596	+		Sama_0970	0.65	-0.6
1,173,597	-		Sama_0970	0.66	+0.6
1,173,609	+		Sama_0970	0.67	+0.0
1,173,609	+		Sama_0970	0.67	+0.9
1,173,610	-		Sama_0970	0.67	+0.8
1,173,613	+		Sama_0970	0.68	+0.6
1,173,614	-		Sama_0970	0.68	-1.6
1,173,614	-		Sama_0970	0.68	+0.3
1,173,614	-		Sama_0970	0.68	-0.8
1,173,632	-		Sama_0970	0.70	+0.3
1,173,685	+		Sama_0970	0.77	+0.9
1,173,817	+				+1.3
1,173,817	+				-0.6
1,173,818	-				-2.0
1,173,818	-				-1.0
1,173,835	+				+1.5
1,173,865	-				-1.7
1,173,970	-				-2.7
1,173,974	+				-0.9
1,173,975	-				-1.7
1,173,976	+				+1.9
1,173,976	+				-0.4
1,173,976	+				-2.2
1,174,009	+				-2.7
1,174,041	+				-3.9
1,174,049	-				-3.4
1,174,049	-				-1.4
1,174,049	-				-2.4
1,174,049	-				-1.4
1,174,049	-				-2.4
1,174,050	+				-2.3
1,174,050	+				-2.2
1,174,050	+				-2.7
1,174,050	+				-4.5
1,174,050	+				-1.4
1,174,050	+				-1.4
1,174,051	-				+0.6
1,174,051	-				-1.7
1,174,053	+				-1.4
1,174,053	+				-2.0
1,174,080	+				-4.4
1,174,089	+				-2.4
1,174,109	-				-2.2
1,174,128	+				-1.4
1,174,129	-				-2.7
1,174,129	-				-2.2
1,174,129	-				-4.2
1,174,129	-				-1.4
1,174,154	-				-1.4
1,174,184	+		Sama_0971	0.11	-4.5
1,174,184	+		Sama_0971	0.11	-2.0
1,174,184	+		Sama_0971	0.11	-3.2
1,174,185	-		Sama_0971	0.11	-0.4
1,174,185	-		Sama_0971	0.11	-2.7
1,174,185	-		Sama_0971	0.11	-0.1
1,174,185	-		Sama_0971	0.11	-1.0
1,174,188	+		Sama_0971	0.12	-1.7
1,174,188	+		Sama_0971	0.12	-3.0
1,174,189	-		Sama_0971	0.12	-2.6
1,174,189	-		Sama_0971	0.12	-3.6
1,174,230	+		Sama_0971	0.15	-2.9
1,174,230	+		Sama_0971	0.15	-1.4
1,174,231	-		Sama_0971	0.15	-2.4
1,174,231	-		Sama_0971	0.15	-3.0
1,174,231	-		Sama_0971	0.15	-3.1
1,174,367	+		Sama_0971	0.26	-2.0
1,174,367	+		Sama_0971	0.26	-2.6
1,174,367	+		Sama_0971	0.26	-4.8
1,174,370	+		Sama_0971	0.26	-1.4
1,174,371	-		Sama_0971	0.26	-2.4
1,174,432	+		Sama_0971	0.31	-3.2
1,174,441	+		Sama_0971	0.32	-2.2
1,174,459	+		Sama_0971	0.33	-2.0
1,174,476	+		Sama_0971	0.34	-2.2
1,174,476	+		Sama_0971	0.34	-2.7
1,174,477	-		Sama_0971	0.34	-2.0
1,174,477	-		Sama_0971	0.34	-1.2
1,174,500	+		Sama_0971	0.36	-2.7
1,174,503	+		Sama_0971	0.37	-1.7
1,174,503	+		Sama_0971	0.37	-2.2
1,174,503	+		Sama_0971	0.37	-1.4
1,174,503	+		Sama_0971	0.37	-1.4
1,174,504	-		Sama_0971	0.37	-2.7
1,174,596	-		Sama_0971	0.44	-3.0
1,174,603	+		Sama_0971	0.44	-3.5
1,174,603	+		Sama_0971	0.44	-3.0
1,174,622	+		Sama_0971	0.46	-0.5
1,174,623	-		Sama_0971	0.46	-1.0
1,174,699	+		Sama_0971	0.52	-2.4
1,174,855	+		Sama_0971	0.64	-2.4
1,174,869	+		Sama_0971	0.66	+0.6
1,174,869	+		Sama_0971	0.66	-1.4
1,174,870	-		Sama_0971	0.66	-1.7
1,174,919	+		Sama_0971	0.70	-1.4
1,174,919	+		Sama_0971	0.70	-1.7
1,174,919	+		Sama_0971	0.70	-3.1
1,174,920	-		Sama_0971	0.70	-3.3
1,174,920	-		Sama_0971	0.70	-2.8
1,174,920	-		Sama_0971	0.70	-2.7
1,174,920	-		Sama_0971	0.70	-2.4
1,174,920	-		Sama_0971	0.70	-2.7
1,174,920	-		Sama_0971	0.70	-2.2
1,174,920	-		Sama_0971	0.70	-3.7
1,175,024	+		Sama_0971	0.78	-3.4
1,175,024	+		Sama_0971	0.78	-3.4
1,175,076	+		Sama_0971	0.82	-4.0
1,175,077	-		Sama_0971	0.82	-3.5
1,175,095	+		Sama_0971	0.83	-2.4
1,175,095	+		Sama_0971	0.83	-3.5
1,175,095	+		Sama_0971	0.83	-1.9
1,175,095	+		Sama_0971	0.83	-3.0
1,175,095	+		Sama_0971	0.83	-2.9
1,175,095	+		Sama_0971	0.83	-1.0
1,175,095	+		Sama_0971	0.83	-2.6
1,175,095	+		Sama_0971	0.83	-3.2
1,175,096	-		Sama_0971	0.84	-0.4
1,175,096	-		Sama_0971	0.84	-2.2
1,175,096	-		Sama_0971	0.84	-2.9
1,175,107	+		Sama_0971	0.84	-3.1
1,175,107	+		Sama_0971	0.84	-1.7
1,175,159	-		Sama_0971	0.89	-2.6
1,175,165	-		Sama_0971	0.89	-3.0
1,175,165	-		Sama_0971	0.89	-2.2
1,175,338	-				+0.8
1,175,340	+				+0.3
1,175,340	+				+0.4
1,175,340	+				+1.4
1,175,340	+				+0.4
1,175,340	+				+1.1
1,175,340	+				+1.0
1,175,340	+				-0.3
1,175,340	+				-0.6
1,175,341	-				+0.6
1,175,341	-				-0.5
1,175,341	-				+2.7
1,175,373	-				+1.0
1,175,410	-				+0.9
1,175,478	+				+0.3
1,175,503	+				+1.0
1,175,504	-				+0.4
1,175,527	+				-0.4
1,175,528	-				-1.4
1,175,528	-				-0.0
1,175,528	-				-0.0
1,175,528	-				-0.9
1,175,566	+				+1.4
1,175,567	-				+0.6
1,175,572	+				+0.8
1,175,572	+				+0.6
1,175,572	+				+0.1
1,175,576	+				+1.9
1,175,576	+				+0.9
1,175,576	+				+0.4
1,175,673	-		Sama_0972	0.10	+1.2
1,175,683	+		Sama_0972	0.11	+1.6
1,175,683	+		Sama_0972	0.11	+0.9
1,175,695	+		Sama_0972	0.13	-0.0
1,175,695	+		Sama_0972	0.13	+2.2
1,175,699	+		Sama_0972	0.13	-0.2
1,175,699	+		Sama_0972	0.13	+1.2
1,175,814	+		Sama_0972	0.28	+0.4
1,175,814	+		Sama_0972	0.28	+0.4
1,175,814	+		Sama_0972	0.28	+2.4
1,175,814	+		Sama_0972	0.28	+0.9
1,175,815	-		Sama_0972	0.28	+1.6
1,175,816	+		Sama_0972	0.28	+0.7
1,175,902	+		Sama_0972	0.38	-0.3
1,175,969	+		Sama_0972	0.47	+2.5
1,176,029	+		Sama_0972	0.54	+0.9
1,176,078	+		Sama_0972	0.60	+0.3
1,176,078	+		Sama_0972	0.60	+2.0
1,176,083	+		Sama_0972	0.61	+0.3
1,176,122	+		Sama_0972	0.66	+1.4
1,176,146	+		Sama_0972	0.69	+0.8
1,176,146	+		Sama_0972	0.69	-0.2
1,176,242	+		Sama_0972	0.80	-0.2
1,176,276	+		Sama_0972	0.85	+1.0
1,176,276	+		Sama_0972	0.85	+1.6
1,176,276	+		Sama_0972	0.85	-0.4