Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3280 and Dsui_3281 overlap by 4 nucleotides Dsui_3281 and Dsui_3282 are separated by 13 nucleotides Dsui_3282 and Dsui_3283 are separated by 446 nucleotides
Dsui_3280: Dsui_3280 - formate dehydrogenase, gamma subunit, at 3,517,442 to 3,518,062
_3280
Dsui_3281: Dsui_3281 - formate dehydrogenase, beta subunit, Fe-S containing, at 3,518,059 to 3,518,949
_3281
Dsui_3282: Dsui_3282 - formate dehydrogenase, alpha subunit, at 3,518,963 to 3,522,016
_3282
Dsui_3283: Dsui_3283 - formate dehydrogenase accessory protein FdhE, at 3,522,463 to 3,523,335
_3283
Position (kb)
3518
3519
3520
3521
3522
3523 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3517.987 kb on + strand, within Dsui_3280 at 3517.987 kb on - strand, within Dsui_3280 at 3518.079 kb on - strand at 3518.107 kb on - strand at 3518.137 kb on - strand at 3518.137 kb on - strand at 3518.154 kb on + strand, within Dsui_3281 at 3518.171 kb on + strand at 3518.179 kb on - strand, within Dsui_3281 at 3518.179 kb on - strand, within Dsui_3281 at 3518.181 kb on + strand, within Dsui_3281 at 3518.183 kb on + strand at 3518.207 kb on - strand, within Dsui_3281 at 3518.249 kb on - strand, within Dsui_3281 at 3518.292 kb on + strand at 3518.416 kb on - strand, within Dsui_3281 at 3518.438 kb on - strand, within Dsui_3281 at 3518.478 kb on - strand, within Dsui_3281 at 3518.478 kb on - strand, within Dsui_3281 at 3518.501 kb on - strand, within Dsui_3281 at 3518.516 kb on - strand, within Dsui_3281 at 3518.616 kb on + strand, within Dsui_3281 at 3518.624 kb on - strand, within Dsui_3281 at 3518.626 kb on + strand at 3518.699 kb on - strand, within Dsui_3281 at 3518.700 kb on + strand, within Dsui_3281 at 3518.708 kb on - strand, within Dsui_3281 at 3518.731 kb on + strand at 3518.731 kb on + strand at 3518.731 kb on + strand at 3518.739 kb on - strand, within Dsui_3281 at 3518.766 kb on + strand, within Dsui_3281 at 3518.879 kb on - strand at 3518.961 kb on + strand at 3518.999 kb on - strand at 3519.042 kb on + strand at 3519.048 kb on - strand at 3519.078 kb on - strand at 3519.094 kb on - strand at 3519.137 kb on - strand at 3519.159 kb on + strand at 3519.325 kb on + strand at 3519.356 kb on + strand, within Dsui_3282 at 3519.405 kb on - strand, within Dsui_3282 at 3519.415 kb on - strand, within Dsui_3282 at 3519.579 kb on - strand, within Dsui_3282 at 3519.610 kb on - strand, within Dsui_3282 at 3519.708 kb on - strand, within Dsui_3282 at 3519.710 kb on + strand at 3519.728 kb on + strand at 3519.741 kb on - strand, within Dsui_3282 at 3519.875 kb on + strand at 3519.951 kb on - strand, within Dsui_3282 at 3520.041 kb on + strand, within Dsui_3282 at 3520.049 kb on - strand, within Dsui_3282 at 3520.074 kb on + strand, within Dsui_3282 at 3520.074 kb on + strand at 3520.114 kb on + strand at 3520.156 kb on - strand, within Dsui_3282 at 3520.207 kb on + strand at 3520.245 kb on + strand, within Dsui_3282 at 3520.418 kb on - strand, within Dsui_3282 at 3520.446 kb on + strand at 3520.476 kb on + strand, within Dsui_3282 at 3520.612 kb on + strand, within Dsui_3282 at 3520.620 kb on - strand, within Dsui_3282 at 3520.635 kb on + strand at 3520.640 kb on + strand, within Dsui_3282 at 3520.659 kb on - strand, within Dsui_3282 at 3520.659 kb on - strand, within Dsui_3282 at 3520.782 kb on + strand, within Dsui_3282 at 3520.782 kb on + strand at 3520.790 kb on - strand, within Dsui_3282 at 3520.790 kb on - strand, within Dsui_3282 at 3520.790 kb on - strand, within Dsui_3282 at 3520.801 kb on + strand at 3520.877 kb on + strand, within Dsui_3282 at 3520.905 kb on - strand, within Dsui_3282 at 3520.944 kb on + strand at 3520.971 kb on + strand, within Dsui_3282 at 3520.979 kb on - strand, within Dsui_3282 at 3520.979 kb on - strand, within Dsui_3282 at 3520.979 kb on - strand, within Dsui_3282 at 3520.979 kb on - strand, within Dsui_3282 at 3520.984 kb on - strand, within Dsui_3282 at 3521.059 kb on - strand, within Dsui_3282 at 3521.059 kb on - strand, within Dsui_3282 at 3521.111 kb on - strand, within Dsui_3282 at 3521.115 kb on + strand, within Dsui_3282 at 3521.139 kb on + strand, within Dsui_3282 at 3521.179 kb on + strand, within Dsui_3282 at 3521.242 kb on + strand at 3521.273 kb on - strand, within Dsui_3282 at 3521.299 kb on - strand, within Dsui_3282 at 3521.317 kb on - strand, within Dsui_3282 at 3521.416 kb on + strand at 3521.424 kb on - strand, within Dsui_3282 at 3521.461 kb on + strand, within Dsui_3282 at 3521.609 kb on - strand, within Dsui_3282 at 3521.609 kb on - strand, within Dsui_3282 at 3521.653 kb on + strand at 3521.723 kb on - strand at 3521.786 kb on - strand at 3521.824 kb on - strand at 3521.835 kb on - strand at 3521.842 kb on + strand at 3521.873 kb on - strand at 3521.889 kb on + strand at 3521.906 kb on - strand at 3521.993 kb on - strand at 3522.003 kb on + strand at 3522.011 kb on - strand at 3522.046 kb on + strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.068 kb on - strand at 3522.073 kb on - strand at 3522.293 kb on + strand at 3522.393 kb on + strand at 3522.426 kb on + strand at 3522.537 kb on - strand at 3522.557 kb on + strand, within Dsui_3283 at 3522.614 kb on + strand, within Dsui_3283 at 3522.634 kb on - strand at 3522.794 kb on + strand, within Dsui_3283 at 3522.972 kb on + strand, within Dsui_3283 at 3522.972 kb on + strand, within Dsui_3283 at 3522.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 3,517,987 + Dsui_3280 0.88 +1.3 3,517,987 - Dsui_3280 0.88 -0.0 3,518,079 - -0.2 3,518,107 - +0.0 3,518,137 - +0.9 3,518,137 - -0.1 3,518,154 + Dsui_3281 0.11 +0.2 3,518,171 + +1.1 3,518,179 - Dsui_3281 0.13 +0.8 3,518,179 - Dsui_3281 0.13 +0.5 3,518,181 + Dsui_3281 0.14 -1.1 3,518,183 + -0.1 3,518,207 - Dsui_3281 0.17 -0.1 3,518,249 - Dsui_3281 0.21 +0.6 3,518,292 + +1.5 3,518,416 - Dsui_3281 0.40 -0.7 3,518,438 - Dsui_3281 0.43 +0.4 3,518,478 - Dsui_3281 0.47 -0.6 3,518,478 - Dsui_3281 0.47 -0.1 3,518,501 - Dsui_3281 0.50 +0.2 3,518,516 - Dsui_3281 0.51 -0.5 3,518,616 + Dsui_3281 0.63 -1.8 3,518,624 - Dsui_3281 0.63 +0.2 3,518,626 + -1.1 3,518,699 - Dsui_3281 0.72 +0.1 3,518,700 + Dsui_3281 0.72 -0.3 3,518,708 - Dsui_3281 0.73 +0.1 3,518,731 + +1.5 3,518,731 + -1.1 3,518,731 + -0.5 3,518,739 - Dsui_3281 0.76 -0.1 3,518,766 + Dsui_3281 0.79 +0.7 3,518,879 - +1.5 3,518,961 + -0.0 3,518,999 - -0.3 3,519,042 + +0.8 3,519,048 - +0.3 3,519,078 - +0.2 3,519,094 - -0.0 3,519,137 - +1.2 3,519,159 + +0.5 3,519,325 + +0.9 3,519,356 + Dsui_3282 0.13 -1.3 3,519,405 - Dsui_3282 0.14 -0.2 3,519,415 - Dsui_3282 0.15 +1.2 3,519,579 - Dsui_3282 0.20 +0.1 3,519,610 - Dsui_3282 0.21 +0.1 3,519,708 - Dsui_3282 0.24 +0.6 3,519,710 + -0.1 3,519,728 + +0.2 3,519,741 - Dsui_3282 0.25 +0.6 3,519,875 + +0.5 3,519,951 - Dsui_3282 0.32 +0.3 3,520,041 + Dsui_3282 0.35 -1.3 3,520,049 - Dsui_3282 0.36 -0.2 3,520,074 + Dsui_3282 0.36 -0.1 3,520,074 + -1.3 3,520,114 + -0.5 3,520,156 - Dsui_3282 0.39 +0.3 3,520,207 + -0.1 3,520,245 + Dsui_3282 0.42 -2.0 3,520,418 - Dsui_3282 0.48 +0.0 3,520,446 + +1.5 3,520,476 + Dsui_3282 0.50 +0.7 3,520,612 + Dsui_3282 0.54 -1.7 3,520,620 - Dsui_3282 0.54 +1.3 3,520,635 + +0.5 3,520,640 + Dsui_3282 0.55 -1.5 3,520,659 - Dsui_3282 0.56 +1.2 3,520,659 - Dsui_3282 0.56 +1.1 3,520,782 + Dsui_3282 0.60 -0.9 3,520,782 + +0.5 3,520,790 - Dsui_3282 0.60 -0.2 3,520,790 - Dsui_3282 0.60 +0.0 3,520,790 - Dsui_3282 0.60 -0.2 3,520,801 + -0.3 3,520,877 + Dsui_3282 0.63 +0.3 3,520,905 - Dsui_3282 0.64 -0.1 3,520,944 + +1.5 3,520,971 + Dsui_3282 0.66 -1.3 3,520,979 - Dsui_3282 0.66 +0.6 3,520,979 - Dsui_3282 0.66 +1.5 3,520,979 - Dsui_3282 0.66 +0.1 3,520,979 - Dsui_3282 0.66 +0.3 3,520,984 - Dsui_3282 0.66 +0.3 3,521,059 - Dsui_3282 0.69 +0.8 3,521,059 - Dsui_3282 0.69 +0.3 3,521,111 - Dsui_3282 0.70 +0.5 3,521,115 + Dsui_3282 0.70 +0.6 3,521,139 + Dsui_3282 0.71 -0.8 3,521,179 + Dsui_3282 0.73 -0.7 3,521,242 + -1.5 3,521,273 - Dsui_3282 0.76 +0.6 3,521,299 - Dsui_3282 0.76 -1.0 3,521,317 - Dsui_3282 0.77 -0.7 3,521,416 + +0.5 3,521,424 - Dsui_3282 0.81 +0.4 3,521,461 + Dsui_3282 0.82 +0.5 3,521,609 - Dsui_3282 0.87 +0.3 3,521,609 - Dsui_3282 0.87 +1.0 3,521,653 + +0.5 3,521,723 - +0.2 3,521,786 - +0.6 3,521,824 - +0.1 3,521,835 - -0.2 3,521,842 + +0.5 3,521,873 - -0.1 3,521,889 + -0.5 3,521,906 - -0.1 3,521,993 - +0.6 3,522,003 + +2.1 3,522,011 - +0.5 3,522,046 + +0.5 3,522,054 - +0.4 3,522,054 - +0.2 3,522,054 - -0.1 3,522,054 - -0.3 3,522,054 - +0.3 3,522,054 - +0.1 3,522,054 - -1.1 3,522,054 - +0.3 3,522,068 - +0.3 3,522,073 - -0.0 3,522,293 + +1.5 3,522,393 + -0.6 3,522,426 + +0.5 3,522,537 - -0.8 3,522,557 + Dsui_3283 0.11 -1.3 3,522,614 + Dsui_3283 0.17 +0.9 3,522,634 - -0.1 3,522,794 + Dsui_3283 0.38 +0.9 3,522,972 + Dsui_3283 0.58 +0.2 3,522,972 + Dsui_3283 0.58 -0.5 3,522,975 - +1.5
Or see this region's nucleotide sequence