Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02400 and PGA1_c02420 are separated by 457 nucleotides PGA1_c02420 and PGA1_c02430 are separated by 235 nucleotides
PGA1_c02400: PGA1_c02400 - putative major facilitator superfamily transporter, at 217,028 to 218,269
_c02400
PGA1_c02420: PGA1_c02420 - V8-like Glu-specific endopeptidase, at 218,727 to 219,440
_c02420
PGA1_c02430: PGA1_c02430 - type I secretion membrane fusion protein, HlyD family, at 219,676 to 220,845
_c02430
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 217.775 kb on - strand, within PGA1_c02400 at 217.797 kb on + strand, within PGA1_c02400 at 217.797 kb on + strand, within PGA1_c02400 at 217.805 kb on - strand, within PGA1_c02400 at 217.805 kb on - strand, within PGA1_c02400 at 217.805 kb on - strand, within PGA1_c02400 at 217.822 kb on + strand, within PGA1_c02400 at 217.864 kb on + strand, within PGA1_c02400 at 217.966 kb on + strand, within PGA1_c02400 at 218.013 kb on + strand, within PGA1_c02400 at 218.065 kb on + strand, within PGA1_c02400 at 218.072 kb on + strand, within PGA1_c02400 at 218.092 kb on + strand, within PGA1_c02400 at 218.249 kb on + strand at 218.249 kb on + strand at 218.249 kb on + strand at 218.249 kb on + strand at 218.257 kb on - strand at 218.267 kb on - strand at 218.267 kb on - strand at 218.282 kb on + strand at 218.283 kb on + strand at 218.283 kb on + strand at 218.283 kb on + strand at 218.290 kb on - strand at 218.291 kb on - strand at 218.291 kb on - strand at 218.291 kb on - strand at 218.293 kb on - strand at 218.327 kb on - strand at 218.367 kb on - strand at 218.439 kb on + strand at 218.440 kb on + strand at 218.447 kb on - strand at 218.454 kb on - strand at 218.454 kb on - strand at 218.454 kb on - strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.485 kb on - strand at 218.487 kb on - strand at 218.487 kb on - strand at 218.551 kb on + strand at 218.571 kb on - strand at 218.596 kb on + strand at 218.596 kb on + strand at 218.596 kb on + strand at 218.596 kb on + strand at 218.597 kb on + strand at 218.604 kb on - strand at 218.615 kb on - strand at 218.649 kb on + strand at 218.650 kb on - strand at 218.673 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.691 kb on + strand at 218.691 kb on + strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.698 kb on + strand at 218.698 kb on + strand at 218.699 kb on - strand at 218.699 kb on - strand at 218.706 kb on - strand at 218.706 kb on - strand at 218.707 kb on - strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.782 kb on - strand at 218.782 kb on - strand at 218.812 kb on - strand, within PGA1_c02420 at 218.835 kb on + strand, within PGA1_c02420 at 218.872 kb on - strand, within PGA1_c02420 at 218.996 kb on + strand, within PGA1_c02420 at 219.115 kb on + strand, within PGA1_c02420 at 219.115 kb on - strand, within PGA1_c02420 at 219.156 kb on - strand, within PGA1_c02420 at 219.176 kb on + strand, within PGA1_c02420 at 219.177 kb on + strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.232 kb on - strand, within PGA1_c02420 at 219.269 kb on - strand, within PGA1_c02420 at 219.297 kb on + strand, within PGA1_c02420 at 219.323 kb on - strand, within PGA1_c02420 at 219.456 kb on + strand at 219.495 kb on - strand at 219.524 kb on - strand at 219.578 kb on - strand at 219.578 kb on - strand at 219.589 kb on + strand at 219.589 kb on + strand at 219.589 kb on + strand at 219.597 kb on - strand at 219.597 kb on - strand at 219.597 kb on - strand at 219.597 kb on - strand at 219.607 kb on - strand at 219.607 kb on - strand at 219.632 kb on + strand at 219.655 kb on + strand at 219.662 kb on + strand at 219.681 kb on - strand at 219.681 kb on - strand at 219.852 kb on - strand, within PGA1_c02430 at 219.931 kb on + strand, within PGA1_c02430 at 219.937 kb on + strand, within PGA1_c02430 at 219.945 kb on - strand, within PGA1_c02430 at 219.973 kb on + strand, within PGA1_c02430 at 219.991 kb on - strand, within PGA1_c02430 at 220.006 kb on - strand, within PGA1_c02430 at 220.006 kb on - strand, within PGA1_c02430 at 220.221 kb on + strand, within PGA1_c02430 at 220.221 kb on + strand, within PGA1_c02430 at 220.221 kb on + strand, within PGA1_c02430 at 220.295 kb on + strand, within PGA1_c02430 at 220.303 kb on - strand, within PGA1_c02430 at 220.305 kb on + strand, within PGA1_c02430 at 220.337 kb on + strand, within PGA1_c02430 at 220.345 kb on - strand, within PGA1_c02430 at 220.415 kb on + strand, within PGA1_c02430 at 220.415 kb on + strand, within PGA1_c02430 at 220.423 kb on - strand, within PGA1_c02430 at 220.436 kb on + strand, within PGA1_c02430 at 220.439 kb on - strand, within PGA1_c02430 at 220.439 kb on - strand, within PGA1_c02430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 217,775 - PGA1_c02400 0.60 -2.8 217,797 + PGA1_c02400 0.62 -0.9 217,797 + PGA1_c02400 0.62 -0.3 217,805 - PGA1_c02400 0.63 +1.0 217,805 - PGA1_c02400 0.63 +0.1 217,805 - PGA1_c02400 0.63 -0.1 217,822 + PGA1_c02400 0.64 +0.6 217,864 + PGA1_c02400 0.67 +0.0 217,966 + PGA1_c02400 0.76 -0.3 218,013 + PGA1_c02400 0.79 +1.0 218,065 + PGA1_c02400 0.83 +0.8 218,072 + PGA1_c02400 0.84 +1.6 218,092 + PGA1_c02400 0.86 -1.9 218,249 + -1.2 218,249 + -0.8 218,249 + +1.2 218,249 + -0.1 218,257 - -0.3 218,267 - +0.6 218,267 - +0.2 218,282 + +0.0 218,283 + -1.3 218,283 + -0.2 218,283 + +0.6 218,290 - -1.0 218,291 - -2.7 218,291 - -1.8 218,291 - +1.1 218,293 - -0.4 218,327 - +1.6 218,367 - +0.7 218,439 + -1.0 218,440 + +0.6 218,447 - -0.1 218,454 - +0.4 218,454 - -0.4 218,454 - -1.3 218,479 + +0.2 218,479 + +1.0 218,479 + -1.6 218,479 + +0.8 218,479 + -2.2 218,479 + +1.9 218,479 + +0.5 218,479 + -0.6 218,479 + -0.1 218,479 + -0.1 218,485 - +0.2 218,487 - +1.0 218,487 - -1.4 218,551 + -0.4 218,571 - -2.9 218,596 + +0.4 218,596 + +1.1 218,596 + +0.4 218,596 + +0.2 218,597 + +0.9 218,604 - -0.9 218,615 - +0.3 218,649 + -0.9 218,650 - -1.0 218,673 + -0.1 218,686 + -0.6 218,686 + +0.8 218,686 + +1.3 218,686 + -0.6 218,686 + +0.6 218,686 + -0.2 218,686 + +1.4 218,686 + -1.6 218,686 + -1.3 218,686 + +1.0 218,686 + +0.1 218,686 + -0.4 218,686 + -0.6 218,691 + -0.2 218,691 + +0.3 218,694 - -0.8 218,694 - +1.0 218,694 - -1.2 218,694 - +0.4 218,698 + +0.7 218,698 + +0.4 218,699 - -0.3 218,699 - -1.3 218,706 - +0.4 218,706 - -0.2 218,707 - +1.9 218,774 + +0.3 218,774 + -0.6 218,774 + +0.6 218,774 + -0.6 218,774 + +0.7 218,782 - -2.0 218,782 - +1.2 218,812 - PGA1_c02420 0.12 +0.0 218,835 + PGA1_c02420 0.15 +0.6 218,872 - PGA1_c02420 0.20 -0.5 218,996 + PGA1_c02420 0.38 +0.2 219,115 + PGA1_c02420 0.54 -1.4 219,115 - PGA1_c02420 0.54 -1.0 219,156 - PGA1_c02420 0.60 +0.7 219,176 + PGA1_c02420 0.63 -1.0 219,177 + PGA1_c02420 0.63 -0.6 219,185 - PGA1_c02420 0.64 -0.9 219,185 - PGA1_c02420 0.64 +0.0 219,185 - PGA1_c02420 0.64 -0.1 219,232 - PGA1_c02420 0.71 -1.0 219,269 - PGA1_c02420 0.76 -0.4 219,297 + PGA1_c02420 0.80 -1.8 219,323 - PGA1_c02420 0.83 -0.1 219,456 + +0.3 219,495 - +1.2 219,524 - +0.6 219,578 - -2.3 219,578 - -0.3 219,589 + -0.2 219,589 + +0.5 219,589 + -1.2 219,597 - -0.2 219,597 - +0.7 219,597 - +0.0 219,597 - -3.1 219,607 - -1.0 219,607 - +0.3 219,632 + +0.2 219,655 + +0.3 219,662 + +2.6 219,681 - +1.0 219,681 - -1.0 219,852 - PGA1_c02430 0.15 +1.6 219,931 + PGA1_c02430 0.22 +3.4 219,937 + PGA1_c02430 0.22 +0.7 219,945 - PGA1_c02430 0.23 +0.3 219,973 + PGA1_c02430 0.25 +0.8 219,991 - PGA1_c02430 0.27 +1.6 220,006 - PGA1_c02430 0.28 +1.1 220,006 - PGA1_c02430 0.28 +2.2 220,221 + PGA1_c02430 0.47 +0.9 220,221 + PGA1_c02430 0.47 +1.2 220,221 + PGA1_c02430 0.47 -2.5 220,295 + PGA1_c02430 0.53 +1.0 220,303 - PGA1_c02430 0.54 +2.0 220,305 + PGA1_c02430 0.54 +0.7 220,337 + PGA1_c02430 0.56 +0.7 220,345 - PGA1_c02430 0.57 -0.4 220,415 + PGA1_c02430 0.63 +2.0 220,415 + PGA1_c02430 0.63 +0.7 220,423 - PGA1_c02430 0.64 +0.8 220,436 + PGA1_c02430 0.65 +1.3 220,439 - PGA1_c02430 0.65 +2.1 220,439 - PGA1_c02430 0.65 -0.1
Or see this region's nucleotide sequence