Strain Fitness in Dechlorosoma suillum PS around Dsui_2516

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2516 and Dsui_2517 overlap by 23 nucleotides Dsui_2516: Dsui_2516 - putative membrane protein, at 2,666,727 to 2,667,992 _2516 Dsui_2517: Dsui_2517 - transposase, at 2,667,970 to 2,668,926 _2517 Position (kb) 2666 2667 2668Strain fitness (log2 ratio) -1 0 1at 2666.053 kb on + strandat 2666.200 kb on - strandat 2666.218 kb on - strandat 2666.305 kb on + strandat 2666.316 kb on + strandat 2666.352 kb on - strandat 2666.363 kb on + strandat 2666.436 kb on + strandat 2666.444 kb on + strandat 2666.551 kb on + strandat 2666.551 kb on + strandat 2666.559 kb on - strandat 2666.570 kb on - strandat 2666.608 kb on + strandat 2666.730 kb on + strandat 2667.184 kb on + strandat 2667.252 kb on - strand, within Dsui_2516at 2667.319 kb on + strand, within Dsui_2516at 2667.326 kb on - strand, within Dsui_2516at 2667.326 kb on - strand, within Dsui_2516at 2667.326 kb on - strand, within Dsui_2516at 2667.355 kb on - strand, within Dsui_2516at 2667.369 kb on + strand, within Dsui_2516at 2667.380 kb on + strand, within Dsui_2516at 2667.512 kb on - strandat 2667.719 kb on + strand, within Dsui_2516

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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2,666,053 + -0.9
2,666,200 - +0.6
2,666,218 - -0.0
2,666,305 + -0.8
2,666,316 + -1.1
2,666,352 - -0.1
2,666,363 + -0.6
2,666,436 + -0.2
2,666,444 + -0.3
2,666,551 + -0.5
2,666,551 + -1.1
2,666,559 - -0.8
2,666,570 - -0.4
2,666,608 + -0.2
2,666,730 + -0.5
2,667,184 + -0.0
2,667,252 - Dsui_2516 0.41 -0.7
2,667,319 + Dsui_2516 0.47 -0.5
2,667,326 - Dsui_2516 0.47 +1.2
2,667,326 - Dsui_2516 0.47 -0.8
2,667,326 - Dsui_2516 0.47 -1.3
2,667,355 - Dsui_2516 0.50 -0.3
2,667,369 + Dsui_2516 0.51 -0.3
2,667,380 + Dsui_2516 0.52 -1.3
2,667,512 - +0.7
2,667,719 + Dsui_2516 0.78 +0.0

Or see this region's nucleotide sequence