Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01940

Experiment: m.b. Lomefloxacin 0.00078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01930 and PGA1_c01940 are separated by 135 nucleotidesPGA1_c01940 and PGA1_c01950 are separated by 11 nucleotides PGA1_c01930: PGA1_c01930 - replication-associated recombination protein A, at 176,082 to 177,404 _c01930 PGA1_c01940: PGA1_c01940 - crcB-like protein, at 177,540 to 177,920 _c01940 PGA1_c01950: PGA1_c01950 - ribosomal large subunit pseudouridine synthase C, at 177,932 to 178,963 _c01950 Position (kb) 177 178Strain fitness (log2 ratio) -2 -1 0 1 2at 176.562 kb on + strand, within PGA1_c01930at 176.562 kb on + strand, within PGA1_c01930at 176.562 kb on + strand, within PGA1_c01930at 176.562 kb on + strand, within PGA1_c01930at 176.562 kb on + strand, within PGA1_c01930at 176.562 kb on + strand, within PGA1_c01930at 176.570 kb on - strand, within PGA1_c01930at 176.570 kb on - strand, within PGA1_c01930at 176.579 kb on + strand, within PGA1_c01930at 176.651 kb on - strand, within PGA1_c01930at 176.656 kb on + strand, within PGA1_c01930at 176.789 kb on - strand, within PGA1_c01930at 176.861 kb on + strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.869 kb on - strand, within PGA1_c01930at 176.878 kb on + strand, within PGA1_c01930at 176.878 kb on + strand, within PGA1_c01930at 176.878 kb on + strand, within PGA1_c01930at 176.886 kb on - strand, within PGA1_c01930at 176.886 kb on - strand, within PGA1_c01930at 176.900 kb on + strand, within PGA1_c01930at 177.031 kb on - strand, within PGA1_c01930at 177.034 kb on + strand, within PGA1_c01930at 177.074 kb on + strand, within PGA1_c01930at 177.177 kb on + strand, within PGA1_c01930at 177.224 kb on + strand, within PGA1_c01930at 177.233 kb on - strand, within PGA1_c01930at 177.320 kb on - strandat 177.393 kb on + strandat 177.431 kb on - strandat 177.564 kb on + strandat 177.564 kb on + strandat 177.633 kb on - strand, within PGA1_c01940at 177.720 kb on + strand, within PGA1_c01940at 177.720 kb on + strand, within PGA1_c01940at 177.720 kb on + strand, within PGA1_c01940at 177.728 kb on - strand, within PGA1_c01940at 178.917 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM
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176,562 + PGA1_c01930 0.36 -0.1
176,562 + PGA1_c01930 0.36 -0.1
176,562 + PGA1_c01930 0.36 +1.3
176,562 + PGA1_c01930 0.36 -0.6
176,562 + PGA1_c01930 0.36 -1.7
176,562 + PGA1_c01930 0.36 -0.3
176,570 - PGA1_c01930 0.37 -1.1
176,570 - PGA1_c01930 0.37 +0.9
176,579 + PGA1_c01930 0.38 -0.4
176,651 - PGA1_c01930 0.43 -0.6
176,656 + PGA1_c01930 0.43 +1.4
176,789 - PGA1_c01930 0.53 +0.8
176,861 + PGA1_c01930 0.59 -1.7
176,869 - PGA1_c01930 0.59 -0.5
176,869 - PGA1_c01930 0.59 +0.5
176,869 - PGA1_c01930 0.59 +0.0
176,869 - PGA1_c01930 0.59 +0.2
176,869 - PGA1_c01930 0.59 +0.2
176,869 - PGA1_c01930 0.59 +0.2
176,869 - PGA1_c01930 0.59 +1.3
176,878 + PGA1_c01930 0.60 -1.3
176,878 + PGA1_c01930 0.60 -0.3
176,878 + PGA1_c01930 0.60 +1.3
176,886 - PGA1_c01930 0.61 +0.7
176,886 - PGA1_c01930 0.61 +0.4
176,900 + PGA1_c01930 0.62 -0.7
177,031 - PGA1_c01930 0.72 +2.1
177,034 + PGA1_c01930 0.72 +0.8
177,074 + PGA1_c01930 0.75 +0.7
177,177 + PGA1_c01930 0.83 -0.7
177,224 + PGA1_c01930 0.86 +0.6
177,233 - PGA1_c01930 0.87 -0.2
177,320 - -0.6
177,393 + -1.5
177,431 - +0.8
177,564 + -1.8
177,564 + -2.3
177,633 - PGA1_c01940 0.24 -1.5
177,720 + PGA1_c01940 0.47 +0.1
177,720 + PGA1_c01940 0.47 -0.8
177,720 + PGA1_c01940 0.47 -1.5
177,728 - PGA1_c01940 0.49 -0.8
178,917 + -0.4

Or see this region's nucleotide sequence