Strain Fitness in Pseudomonas simiae WCS417 around PS417_21145

Experiment: LB 42C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21140 and PS417_21145 are separated by 126 nucleotidesPS417_21145 and PS417_21150 are separated by 132 nucleotidesPS417_21150 and PS417_21155 are separated by 107 nucleotides PS417_21140: PS417_21140 - LysR family transcriptional regulator, at 4,600,204 to 4,601,133 _21140 PS417_21145: PS417_21145 - oxidoreductase, at 4,601,260 to 4,602,006 _21145 PS417_21150: PS417_21150 - HAD family hydrolase, at 4,602,139 to 4,602,828 _21150 PS417_21155: PS417_21155 - hypothetical protein, at 4,602,936 to 4,603,319 _21155 Position (kb) 4601 4602 4603Strain fitness (log2 ratio) -1 0 1at 4600.302 kb on + strand, within PS417_21140at 4600.302 kb on + strand, within PS417_21140at 4600.303 kb on - strand, within PS417_21140at 4600.344 kb on - strand, within PS417_21140at 4600.622 kb on + strand, within PS417_21140at 4600.817 kb on + strand, within PS417_21140at 4601.169 kb on - strandat 4601.171 kb on - strandat 4601.184 kb on + strandat 4601.248 kb on + strandat 4601.248 kb on + strandat 4601.249 kb on - strandat 4601.370 kb on + strand, within PS417_21145at 4601.370 kb on + strand, within PS417_21145at 4601.370 kb on + strand, within PS417_21145at 4601.371 kb on - strand, within PS417_21145at 4601.374 kb on + strand, within PS417_21145at 4601.375 kb on - strand, within PS417_21145at 4601.375 kb on - strand, within PS417_21145at 4601.375 kb on - strand, within PS417_21145at 4601.652 kb on + strand, within PS417_21145at 4601.652 kb on + strand, within PS417_21145at 4601.652 kb on + strand, within PS417_21145at 4601.652 kb on + strand, within PS417_21145at 4601.653 kb on - strand, within PS417_21145at 4601.653 kb on - strand, within PS417_21145at 4601.800 kb on - strand, within PS417_21145at 4601.936 kb on - strandat 4601.959 kb on + strandat 4602.008 kb on - strandat 4602.077 kb on - strandat 4602.088 kb on + strandat 4602.089 kb on - strandat 4602.215 kb on + strand, within PS417_21150at 4602.216 kb on - strand, within PS417_21150at 4602.589 kb on + strand, within PS417_21150at 4602.641 kb on + strand, within PS417_21150at 4602.641 kb on + strand, within PS417_21150at 4602.641 kb on + strand, within PS417_21150at 4602.641 kb on + strand, within PS417_21150at 4602.641 kb on + strand, within PS417_21150at 4602.642 kb on - strand, within PS417_21150at 4602.744 kb on - strand, within PS417_21150at 4602.902 kb on + strandat 4602.903 kb on - strandat 4602.909 kb on + strandat 4602.909 kb on + strandat 4602.909 kb on + strandat 4602.910 kb on - strandat 4602.910 kb on - strandat 4602.910 kb on - strandat 4602.910 kb on - strandat 4602.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 42C
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4,600,302 + PS417_21140 0.11 -0.1
4,600,302 + PS417_21140 0.11 +0.3
4,600,303 - PS417_21140 0.11 -0.4
4,600,344 - PS417_21140 0.15 -0.7
4,600,622 + PS417_21140 0.45 -0.4
4,600,817 + PS417_21140 0.66 +0.1
4,601,169 - +0.1
4,601,171 - +0.2
4,601,184 + -0.8
4,601,248 + +0.7
4,601,248 + -0.7
4,601,249 - +0.1
4,601,370 + PS417_21145 0.15 -0.7
4,601,370 + PS417_21145 0.15 -0.2
4,601,370 + PS417_21145 0.15 -0.6
4,601,371 - PS417_21145 0.15 -0.2
4,601,374 + PS417_21145 0.15 -0.4
4,601,375 - PS417_21145 0.15 -0.4
4,601,375 - PS417_21145 0.15 +0.5
4,601,375 - PS417_21145 0.15 -0.3
4,601,652 + PS417_21145 0.52 +0.3
4,601,652 + PS417_21145 0.52 +0.9
4,601,652 + PS417_21145 0.52 -0.2
4,601,652 + PS417_21145 0.52 +0.3
4,601,653 - PS417_21145 0.53 -0.2
4,601,653 - PS417_21145 0.53 +0.1
4,601,800 - PS417_21145 0.72 +0.4
4,601,936 - -0.1
4,601,959 + -0.1
4,602,008 - -0.0
4,602,077 - -0.7
4,602,088 + +0.2
4,602,089 - -0.5
4,602,215 + PS417_21150 0.11 +0.2
4,602,216 - PS417_21150 0.11 +0.1
4,602,589 + PS417_21150 0.65 -0.4
4,602,641 + PS417_21150 0.73 +0.7
4,602,641 + PS417_21150 0.73 -0.3
4,602,641 + PS417_21150 0.73 +0.4
4,602,641 + PS417_21150 0.73 -0.1
4,602,641 + PS417_21150 0.73 +0.5
4,602,642 - PS417_21150 0.73 +0.4
4,602,744 - PS417_21150 0.88 -0.2
4,602,902 + +0.3
4,602,903 - -0.4
4,602,909 + +0.8
4,602,909 + -0.2
4,602,909 + -0.7
4,602,910 - -0.3
4,602,910 - +0.0
4,602,910 - +0.0
4,602,910 - +0.3
4,602,910 - +0.1

Or see this region's nucleotide sequence