Experiment: LB 42C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21140 and PS417_21145 are separated by 126 nucleotides PS417_21145 and PS417_21150 are separated by 132 nucleotides PS417_21150 and PS417_21155 are separated by 107 nucleotides
PS417_21140: PS417_21140 - LysR family transcriptional regulator, at 4,600,204 to 4,601,133
_21140
PS417_21145: PS417_21145 - oxidoreductase, at 4,601,260 to 4,602,006
_21145
PS417_21150: PS417_21150 - HAD family hydrolase, at 4,602,139 to 4,602,828
_21150
PS417_21155: PS417_21155 - hypothetical protein, at 4,602,936 to 4,603,319
_21155
Position (kb)
4601
4602
4603 Strain fitness (log2 ratio)
-1
0
1 at 4600.302 kb on + strand, within PS417_21140 at 4600.302 kb on + strand, within PS417_21140 at 4600.303 kb on - strand, within PS417_21140 at 4600.344 kb on - strand, within PS417_21140 at 4600.622 kb on + strand, within PS417_21140 at 4600.817 kb on + strand, within PS417_21140 at 4601.169 kb on - strand at 4601.171 kb on - strand at 4601.184 kb on + strand at 4601.248 kb on + strand at 4601.248 kb on + strand at 4601.249 kb on - strand at 4601.370 kb on + strand, within PS417_21145 at 4601.370 kb on + strand, within PS417_21145 at 4601.370 kb on + strand, within PS417_21145 at 4601.371 kb on - strand, within PS417_21145 at 4601.374 kb on + strand, within PS417_21145 at 4601.375 kb on - strand, within PS417_21145 at 4601.375 kb on - strand, within PS417_21145 at 4601.375 kb on - strand, within PS417_21145 at 4601.652 kb on + strand, within PS417_21145 at 4601.652 kb on + strand, within PS417_21145 at 4601.652 kb on + strand, within PS417_21145 at 4601.652 kb on + strand, within PS417_21145 at 4601.653 kb on - strand, within PS417_21145 at 4601.653 kb on - strand, within PS417_21145 at 4601.800 kb on - strand, within PS417_21145 at 4601.936 kb on - strand at 4601.959 kb on + strand at 4602.008 kb on - strand at 4602.077 kb on - strand at 4602.088 kb on + strand at 4602.089 kb on - strand at 4602.215 kb on + strand, within PS417_21150 at 4602.216 kb on - strand, within PS417_21150 at 4602.589 kb on + strand, within PS417_21150 at 4602.641 kb on + strand, within PS417_21150 at 4602.641 kb on + strand, within PS417_21150 at 4602.641 kb on + strand, within PS417_21150 at 4602.641 kb on + strand, within PS417_21150 at 4602.641 kb on + strand, within PS417_21150 at 4602.642 kb on - strand, within PS417_21150 at 4602.744 kb on - strand, within PS417_21150 at 4602.902 kb on + strand at 4602.903 kb on - strand at 4602.909 kb on + strand at 4602.909 kb on + strand at 4602.909 kb on + strand at 4602.910 kb on - strand at 4602.910 kb on - strand at 4602.910 kb on - strand at 4602.910 kb on - strand at 4602.910 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 42C remove 4,600,302 + PS417_21140 0.11 -0.1 4,600,302 + PS417_21140 0.11 +0.3 4,600,303 - PS417_21140 0.11 -0.4 4,600,344 - PS417_21140 0.15 -0.7 4,600,622 + PS417_21140 0.45 -0.4 4,600,817 + PS417_21140 0.66 +0.1 4,601,169 - +0.1 4,601,171 - +0.2 4,601,184 + -0.8 4,601,248 + +0.7 4,601,248 + -0.7 4,601,249 - +0.1 4,601,370 + PS417_21145 0.15 -0.7 4,601,370 + PS417_21145 0.15 -0.2 4,601,370 + PS417_21145 0.15 -0.6 4,601,371 - PS417_21145 0.15 -0.2 4,601,374 + PS417_21145 0.15 -0.4 4,601,375 - PS417_21145 0.15 -0.4 4,601,375 - PS417_21145 0.15 +0.5 4,601,375 - PS417_21145 0.15 -0.3 4,601,652 + PS417_21145 0.52 +0.3 4,601,652 + PS417_21145 0.52 +0.9 4,601,652 + PS417_21145 0.52 -0.2 4,601,652 + PS417_21145 0.52 +0.3 4,601,653 - PS417_21145 0.53 -0.2 4,601,653 - PS417_21145 0.53 +0.1 4,601,800 - PS417_21145 0.72 +0.4 4,601,936 - -0.1 4,601,959 + -0.1 4,602,008 - -0.0 4,602,077 - -0.7 4,602,088 + +0.2 4,602,089 - -0.5 4,602,215 + PS417_21150 0.11 +0.2 4,602,216 - PS417_21150 0.11 +0.1 4,602,589 + PS417_21150 0.65 -0.4 4,602,641 + PS417_21150 0.73 +0.7 4,602,641 + PS417_21150 0.73 -0.3 4,602,641 + PS417_21150 0.73 +0.4 4,602,641 + PS417_21150 0.73 -0.1 4,602,641 + PS417_21150 0.73 +0.5 4,602,642 - PS417_21150 0.73 +0.4 4,602,744 - PS417_21150 0.88 -0.2 4,602,902 + +0.3 4,602,903 - -0.4 4,602,909 + +0.8 4,602,909 + -0.2 4,602,909 + -0.7 4,602,910 - -0.3 4,602,910 - +0.0 4,602,910 - +0.0 4,602,910 - +0.3 4,602,910 - +0.1
Or see this region's nucleotide sequence