Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12900

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
2,944,530	+				+1.4
2,944,552	-				-0.8
2,944,678	+				-1.4
2,944,679	-				+0.3
2,944,723	+				+0.1
2,944,736	+				+0.5
2,944,736	+				-1.6
2,944,756	+				+0.2
2,944,757	-				+1.8
2,944,814	+		BPHYT_RS12895	0.17	-0.2
2,944,826	-		BPHYT_RS12895	0.18	-1.5
2,944,868	+		BPHYT_RS12895	0.23	+0.5
2,944,948	+		BPHYT_RS12895	0.33	-1.5
2,945,180	+		BPHYT_RS12895	0.61	+0.0
2,945,181	-		BPHYT_RS12895	0.61	+0.3
2,945,321	+		BPHYT_RS12895	0.78	+0.3
2,945,322	-		BPHYT_RS12895	0.78	+0.9
2,945,356	+		BPHYT_RS12895	0.83	-1.8
2,945,356	+		BPHYT_RS12895	0.83	-0.7
2,945,357	-		BPHYT_RS12895	0.83	-1.5
2,945,570	-		BPHYT_RS12900	0.16	-1.3
2,945,570	-		BPHYT_RS12900	0.16	-0.2
2,945,720	-		BPHYT_RS12900	0.55	-2.2
2,945,925	+				+1.4
2,945,926	-				-1.0
2,945,986	+				+0.7
2,946,019	+				-2.0
2,946,067	+				-0.7
2,946,067	+				-0.3
2,946,076	-				+0.9
2,946,076	-				-1.5
2,946,174	+				+0.6
2,946,174	+				-0.5
2,946,320	-				-1.3
2,946,390	+				-1.1
2,946,391	-				+0.7
2,946,556	+				+0.2
2,946,594	+				+0.4
2,946,595	-				+0.5
2,946,635	+				-0.9
2,946,717	+				-0.3
2,946,878	+		BPHYT_RS12905	0.30	+0.2
2,946,879	-		BPHYT_RS12905	0.30	+0.5
2,946,879	-		BPHYT_RS12905	0.30	-1.5