Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04910

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
1,128,039	+		BPHYT_RS04900	0.88	+1.1
1,128,301	-				-1.0
1,128,303	-				-0.7
1,128,303	-				+0.3
1,128,401	+				-0.1
1,128,402	-				-0.9
1,128,402	-				-1.3
1,128,431	-		BPHYT_RS04905	0.15	+0.1
1,128,524	-		BPHYT_RS04905	0.38	+1.7
1,128,524	-		BPHYT_RS04905	0.38	-1.5
1,128,896	-				+1.8
1,128,996	-				-2.8
1,129,012	-				+1.7
1,129,012	-				-0.0
1,129,067	-		BPHYT_RS04910	0.18	-2.3
1,129,458	+				-0.8
1,129,458	+				-0.2
1,129,459	-				-0.5
1,129,459	-				-0.4
1,129,499	+				-0.9
1,129,499	+				-0.6
1,129,572	+				-0.6
1,129,572	+				+0.0
1,129,693	+		BPHYT_RS04915	0.11	-0.0
1,129,836	+		BPHYT_RS04915	0.34	-0.7
1,129,837	-		BPHYT_RS04915	0.34	-0.6
1,129,918	-		BPHYT_RS04915	0.46	+2.3
1,129,954	-		BPHYT_RS04915	0.52	-1.4
1,130,116	+		BPHYT_RS04915	0.77	-2.1
1,130,137	+		BPHYT_RS04915	0.81	+0.6
1,130,137	+		BPHYT_RS04915	0.81	+0.4
1,130,138	-		BPHYT_RS04915	0.81	-0.7
1,130,138	-		BPHYT_RS04915	0.81	-1.4
1,130,314	+				+1.0
1,130,315	-				-0.0
1,130,315	-				-0.8
1,130,363	+				+0.1