Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_28 and Pf6N2E2_29 are separated by 223 nucleotides Pf6N2E2_29 and Pf6N2E2_30 are separated by 37 nucleotides Pf6N2E2_30 and Pf6N2E2_31 are separated by 97 nucleotides
Pf6N2E2_28 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 65,741 to 66,181
_28
Pf6N2E2_29 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily, at 66,405 to 66,905
_29
Pf6N2E2_30 - Antisigma transmembrane sensor FpvR, at 66,943 to 67,926
_30
Pf6N2E2_31 - Iron(III) dicitrate transport protein FecA @ Iron siderophore receptor protein, at 68,024 to 70,462
_31
Position (kb) 66
67
68 Strain fitness (log2 ratio) -2
-1
0
1 at 66.062 kb on + strand, within Pf6N2E2_28 at 66.063 kb on - strand, within Pf6N2E2_28 at 66.063 kb on - strand, within Pf6N2E2_28 at 66.208 kb on + strand at 66.209 kb on - strand at 66.248 kb on + strand at 66.248 kb on + strand at 66.248 kb on + strand at 66.248 kb on + strand at 66.249 kb on - strand at 66.249 kb on - strand at 66.296 kb on + strand at 66.296 kb on + strand at 66.296 kb on + strand at 66.297 kb on - strand at 66.297 kb on - strand at 66.297 kb on - strand at 66.302 kb on + strand at 66.302 kb on + strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.342 kb on + strand at 66.343 kb on - strand at 66.343 kb on - strand at 66.343 kb on - strand at 66.355 kb on + strand at 66.447 kb on + strand at 66.448 kb on - strand at 66.448 kb on - strand at 66.574 kb on - strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.662 kb on + strand, within Pf6N2E2_29 at 66.663 kb on - strand, within Pf6N2E2_29 at 66.693 kb on + strand, within Pf6N2E2_29 at 66.693 kb on + strand, within Pf6N2E2_29 at 66.693 kb on + strand, within Pf6N2E2_29 at 66.693 kb on + strand, within Pf6N2E2_29 at 66.694 kb on - strand, within Pf6N2E2_29 at 66.694 kb on - strand, within Pf6N2E2_29 at 66.694 kb on - strand, within Pf6N2E2_29 at 66.694 kb on - strand, within Pf6N2E2_29 at 66.694 kb on - strand, within Pf6N2E2_29 at 66.849 kb on + strand, within Pf6N2E2_29 at 66.850 kb on - strand, within Pf6N2E2_29 at 66.850 kb on - strand, within Pf6N2E2_29 at 66.851 kb on + strand, within Pf6N2E2_29 at 66.851 kb on + strand, within Pf6N2E2_29 at 66.852 kb on - strand, within Pf6N2E2_29 at 66.852 kb on - strand, within Pf6N2E2_29 at 67.113 kb on + strand, within Pf6N2E2_30 at 67.113 kb on + strand, within Pf6N2E2_30 at 67.207 kb on + strand, within Pf6N2E2_30 at 67.282 kb on + strand, within Pf6N2E2_30 at 67.294 kb on + strand, within Pf6N2E2_30 at 67.294 kb on + strand, within Pf6N2E2_30 at 67.294 kb on + strand, within Pf6N2E2_30 at 67.295 kb on - strand, within Pf6N2E2_30 at 67.377 kb on + strand, within Pf6N2E2_30 at 67.377 kb on + strand, within Pf6N2E2_30 at 67.378 kb on - strand, within Pf6N2E2_30 at 67.687 kb on - strand, within Pf6N2E2_30 at 67.866 kb on + strand at 67.866 kb on + strand at 67.866 kb on + strand at 67.866 kb on + strand at 67.867 kb on - strand at 67.913 kb on + strand at 67.914 kb on - strand at 67.914 kb on - strand at 67.994 kb on - strand at 68.053 kb on + strand at 68.061 kb on + strand at 68.061 kb on + strand at 68.061 kb on + strand at 68.062 kb on - strand at 68.062 kb on - strand at 68.062 kb on - strand at 68.117 kb on + strand at 68.132 kb on - strand at 68.676 kb on - strand, within Pf6N2E2_31
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 66,062 + Pf6N2E2_28 0.73 -0.7 66,063 - Pf6N2E2_28 0.73 +1.5 66,063 - Pf6N2E2_28 0.73 -0.5 66,208 + -1.0 66,209 - -0.5 66,248 + +1.1 66,248 + +0.5 66,248 + -0.5 66,248 + +0.5 66,249 - -0.7 66,249 - +0.5 66,296 + +0.5 66,296 + +0.5 66,296 + +0.5 66,297 - +0.5 66,297 - +0.5 66,297 - +0.5 66,302 + +0.5 66,302 + -1.5 66,303 - -1.5 66,303 - -1.5 66,303 - +0.5 66,303 - -1.3 66,303 - +0.5 66,303 - +0.5 66,303 - -0.5 66,342 + +0.5 66,343 - +0.5 66,343 - +0.5 66,343 - -0.5 66,355 + +0.5 66,447 + +0.5 66,448 - -0.7 66,448 - -0.5 66,574 - Pf6N2E2_29 0.34 -1.0 66,577 + Pf6N2E2_29 0.34 +0.5 66,577 + Pf6N2E2_29 0.34 +0.5 66,577 + Pf6N2E2_29 0.34 -0.6 66,577 + Pf6N2E2_29 0.34 +0.5 66,577 + Pf6N2E2_29 0.34 +0.5 66,577 + Pf6N2E2_29 0.34 -0.0 66,662 + Pf6N2E2_29 0.51 -0.5 66,663 - Pf6N2E2_29 0.51 -1.8 66,693 + Pf6N2E2_29 0.57 +0.5 66,693 + Pf6N2E2_29 0.57 +1.5 66,693 + Pf6N2E2_29 0.57 -0.8 66,693 + Pf6N2E2_29 0.57 +0.2 66,694 - Pf6N2E2_29 0.58 +0.5 66,694 - Pf6N2E2_29 0.58 -0.5 66,694 - Pf6N2E2_29 0.58 -0.5 66,694 - Pf6N2E2_29 0.58 -1.3 66,694 - Pf6N2E2_29 0.58 +0.5 66,849 + Pf6N2E2_29 0.89 -0.5 66,850 - Pf6N2E2_29 0.89 +0.5 66,850 - Pf6N2E2_29 0.89 +0.5 66,851 + Pf6N2E2_29 0.89 +0.5 66,851 + Pf6N2E2_29 0.89 -1.3 66,852 - Pf6N2E2_29 0.89 -0.5 66,852 - Pf6N2E2_29 0.89 -0.4 67,113 + Pf6N2E2_30 0.17 -0.5 67,113 + Pf6N2E2_30 0.17 +0.5 67,207 + Pf6N2E2_30 0.27 +0.3 67,282 + Pf6N2E2_30 0.34 +0.5 67,294 + Pf6N2E2_30 0.36 +0.5 67,294 + Pf6N2E2_30 0.36 -0.5 67,294 + Pf6N2E2_30 0.36 -1.5 67,295 - Pf6N2E2_30 0.36 -0.5 67,377 + Pf6N2E2_30 0.44 -0.5 67,377 + Pf6N2E2_30 0.44 +0.5 67,378 - Pf6N2E2_30 0.44 +0.5 67,687 - Pf6N2E2_30 0.76 +0.5 67,866 + +1.0 67,866 + +0.5 67,866 + +0.5 67,866 + +0.5 67,867 - +0.5 67,913 + -0.5 67,914 - -0.6 67,914 - +0.5 67,994 - +0.5 68,053 + -0.5 68,061 + -1.0 68,061 + -0.5 68,061 + +0.5 68,062 - +0.5 68,062 - +0.5 68,062 - -0.5 68,117 + +0.5 68,132 - +0.5 68,676 - Pf6N2E2_31 0.27 -1.0
Or see this region's nucleotide sequence