Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_170 and Pf6N2E2_171 are separated by 68 nucleotides Pf6N2E2_171 and Pf6N2E2_172 are separated by 289 nucleotides Pf6N2E2_172 and Pf6N2E2_173 are separated by 371 nucleotides
Pf6N2E2_170 - lipoprotein, putative, at 222,087 to 222,401
_170
Pf6N2E2_171 - Cold shock protein CspG, at 222,470 to 222,682
_171
Pf6N2E2_172 - FIG00953292: hypothetical protein, at 222,972 to 223,274
_172
Pf6N2E2_173 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 223,646 to 225,568
_173
Position (kb) 222
223
224 Strain fitness (log2 ratio) -2
-1
0
1 at 222.063 kb on + strand at 222.063 kb on + strand at 222.063 kb on + strand at 222.064 kb on - strand at 222.113 kb on + strand at 222.113 kb on + strand at 222.113 kb on + strand at 222.114 kb on - strand at 222.114 kb on - strand at 222.359 kb on + strand, within Pf6N2E2_170 at 222.360 kb on - strand, within Pf6N2E2_170 at 222.455 kb on + strand at 222.472 kb on - strand at 222.588 kb on - strand, within Pf6N2E2_171 at 222.687 kb on + strand at 222.703 kb on - strand at 222.703 kb on - strand at 222.704 kb on + strand at 222.704 kb on + strand at 222.705 kb on - strand at 222.715 kb on + strand at 222.715 kb on + strand at 222.716 kb on - strand at 222.716 kb on - strand at 222.755 kb on + strand at 222.903 kb on - strand at 222.903 kb on - strand at 222.903 kb on - strand at 223.084 kb on + strand, within Pf6N2E2_172 at 223.085 kb on - strand, within Pf6N2E2_172 at 223.085 kb on - strand, within Pf6N2E2_172 at 223.177 kb on + strand, within Pf6N2E2_172 at 223.178 kb on - strand, within Pf6N2E2_172 at 223.178 kb on - strand, within Pf6N2E2_172 at 223.178 kb on - strand, within Pf6N2E2_172 at 223.178 kb on - strand, within Pf6N2E2_172 at 223.249 kb on - strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.263 kb on - strand at 223.263 kb on - strand at 223.263 kb on - strand at 223.263 kb on - strand at 223.263 kb on - strand at 223.349 kb on - strand at 223.349 kb on - strand at 223.363 kb on + strand at 223.363 kb on + strand at 223.363 kb on + strand at 223.363 kb on + strand at 223.364 kb on - strand at 223.364 kb on - strand at 223.408 kb on + strand at 223.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 222,063 + -0.7 222,063 + -2.3 222,063 + -0.1 222,064 - -2.1 222,113 + +0.3 222,113 + +0.3 222,113 + -1.3 222,114 - -0.7 222,114 - +0.3 222,359 + Pf6N2E2_170 0.86 +0.3 222,360 - Pf6N2E2_170 0.87 +0.3 222,455 + -0.7 222,472 - +1.3 222,588 - Pf6N2E2_171 0.55 +1.1 222,687 + +1.5 222,703 - -0.5 222,703 - +0.3 222,704 + +1.2 222,704 + +0.3 222,705 - +0.9 222,715 + +1.1 222,715 + +0.3 222,716 - -0.6 222,716 - +0.3 222,755 + +0.3 222,903 - +1.3 222,903 - +0.3 222,903 - -0.6 223,084 + Pf6N2E2_172 0.37 +1.5 223,085 - Pf6N2E2_172 0.37 +0.3 223,085 - Pf6N2E2_172 0.37 +0.3 223,177 + Pf6N2E2_172 0.68 +0.3 223,178 - Pf6N2E2_172 0.68 -0.7 223,178 - Pf6N2E2_172 0.68 -1.3 223,178 - Pf6N2E2_172 0.68 -0.2 223,178 - Pf6N2E2_172 0.68 +0.3 223,249 - -0.7 223,262 + +0.3 223,262 + -0.1 223,262 + +0.3 223,262 + +0.3 223,263 - +0.2 223,263 - -0.3 223,263 - +0.3 223,263 - +0.3 223,263 - -0.3 223,349 - +1.3 223,349 - -0.4 223,363 + -0.0 223,363 + -0.6 223,363 + -1.3 223,363 + -0.3 223,364 - -0.1 223,364 - +0.3 223,408 + -0.7 223,408 + -0.4
Or see this region's nucleotide sequence