Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_765 and Pf6N2E2_766 are separated by 58 nucleotides Pf6N2E2_766 and Pf6N2E2_767 are separated by 236 nucleotides Pf6N2E2_767 and Pf6N2E2_768 are separated by 71 nucleotides Pf6N2E2_768 and Pf6N2E2_769 are separated by 1 nucleotides
Pf6N2E2_765 - Fap system putative outer membrane protein, at 876,839 to 877,585
_765
Pf6N2E2_766 - Fap protein with C39 domain, at 877,644 to 878,324
_766
Pf6N2E2_767 - Fap amyloid fibril major component, at 878,561 to 879,541
_767
Pf6N2E2_768 - Fap amyloid fibril minor component, at 879,613 to 880,206
_768
Pf6N2E2_769 - Fap unknown function protein, at 880,208 to 880,654
_769
Position (kb) 878
879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 877.618 kb on + strand at 877.618 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.663 kb on - strand at 877.771 kb on + strand, within Pf6N2E2_766 at 877.834 kb on + strand, within Pf6N2E2_766 at 877.867 kb on + strand, within Pf6N2E2_766 at 877.894 kb on - strand, within Pf6N2E2_766 at 877.920 kb on + strand, within Pf6N2E2_766 at 878.014 kb on + strand, within Pf6N2E2_766 at 878.014 kb on + strand, within Pf6N2E2_766 at 878.119 kb on + strand, within Pf6N2E2_766 at 878.331 kb on + strand at 878.338 kb on - strand at 878.562 kb on + strand at 878.562 kb on + strand at 878.562 kb on + strand at 878.563 kb on - strand at 878.563 kb on - strand at 878.563 kb on - strand at 878.860 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.919 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.145 kb on + strand, within Pf6N2E2_767 at 879.191 kb on - strand, within Pf6N2E2_767 at 879.191 kb on - strand, within Pf6N2E2_767 at 879.268 kb on + strand, within Pf6N2E2_767 at 879.464 kb on - strand at 879.464 kb on - strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.545 kb on - strand at 879.545 kb on - strand at 879.545 kb on - strand at 879.580 kb on + strand at 879.581 kb on - strand at 879.581 kb on - strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.591 kb on - strand at 879.598 kb on + strand at 879.598 kb on + strand at 879.598 kb on + strand at 879.598 kb on + strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.603 kb on - strand at 879.603 kb on - strand at 879.603 kb on - strand at 879.686 kb on - strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.144 kb on + strand, within Pf6N2E2_768 at 880.144 kb on + strand, within Pf6N2E2_768 at 880.145 kb on - strand, within Pf6N2E2_768 at 880.145 kb on - strand, within Pf6N2E2_768 at 880.206 kb on + strand at 880.207 kb on - strand at 880.207 kb on - strand at 880.207 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 877,618 + -0.3 877,618 + +0.1 877,622 + +0.1 877,622 + +0.1 877,622 + +1.1 877,623 - +0.1 877,623 - +0.1 877,623 - -0.3 877,623 - -1.1 877,623 - +0.1 877,623 - +0.1 877,663 - -0.9 877,771 + Pf6N2E2_766 0.19 -0.9 877,834 + Pf6N2E2_766 0.28 +0.1 877,867 + Pf6N2E2_766 0.33 +0.1 877,894 - Pf6N2E2_766 0.37 -0.9 877,920 + Pf6N2E2_766 0.41 +0.1 878,014 + Pf6N2E2_766 0.54 +0.1 878,014 + Pf6N2E2_766 0.54 -0.1 878,119 + Pf6N2E2_766 0.70 +0.1 878,331 + -1.5 878,338 - -0.9 878,562 + -0.9 878,562 + +0.1 878,562 + -0.7 878,563 - -0.9 878,563 - +0.1 878,563 - +0.1 878,860 + Pf6N2E2_767 0.30 +1.1 878,892 + Pf6N2E2_767 0.34 +0.1 878,892 + Pf6N2E2_767 0.34 -0.9 878,892 + Pf6N2E2_767 0.34 +0.1 878,892 + Pf6N2E2_767 0.34 +0.1 878,893 - Pf6N2E2_767 0.34 -0.9 878,893 - Pf6N2E2_767 0.34 -1.2 878,893 - Pf6N2E2_767 0.34 +0.1 878,893 - Pf6N2E2_767 0.34 +0.1 878,893 - Pf6N2E2_767 0.34 +0.1 878,893 - Pf6N2E2_767 0.34 +0.0 878,893 - Pf6N2E2_767 0.34 +1.2 878,919 + Pf6N2E2_767 0.36 -0.9 879,135 + Pf6N2E2_767 0.59 -1.9 879,135 + Pf6N2E2_767 0.59 +0.1 879,135 + Pf6N2E2_767 0.59 -0.9 879,135 + Pf6N2E2_767 0.59 +0.1 879,136 - Pf6N2E2_767 0.59 -0.2 879,136 - Pf6N2E2_767 0.59 -0.5 879,136 - Pf6N2E2_767 0.59 +0.1 879,145 + Pf6N2E2_767 0.60 +0.3 879,191 - Pf6N2E2_767 0.64 -0.9 879,191 - Pf6N2E2_767 0.64 +0.1 879,268 + Pf6N2E2_767 0.72 +0.1 879,464 - -0.9 879,464 - +0.1 879,544 + +0.1 879,544 + -0.1 879,544 + +0.1 879,544 + -0.6 879,544 + -0.5 879,544 + +0.1 879,545 - +0.1 879,545 - -0.3 879,545 - +0.1 879,580 + -0.9 879,581 - +0.1 879,581 - -1.9 879,590 + -3.0 879,590 + +0.1 879,590 + -0.3 879,590 + -0.9 879,590 + -0.5 879,591 - -0.9 879,598 + +0.1 879,598 + -0.9 879,598 + -2.7 879,598 + +0.1 879,599 - +0.1 879,599 - -0.2 879,599 - +0.1 879,599 - -0.5 879,599 - +0.1 879,602 + -0.5 879,602 + -0.9 879,602 + +0.1 879,602 + -0.9 879,602 + +0.1 879,602 + -0.9 879,602 + +0.1 879,602 + -0.9 879,602 + -0.9 879,602 + +0.1 879,602 + -0.9 879,603 - -1.9 879,603 - +0.1 879,603 - +0.1 879,686 - Pf6N2E2_768 0.12 -0.9 880,082 + Pf6N2E2_768 0.79 -0.4 880,082 + Pf6N2E2_768 0.79 +0.1 880,082 + Pf6N2E2_768 0.79 +0.1 880,082 + Pf6N2E2_768 0.79 +0.1 880,144 + Pf6N2E2_768 0.89 -1.3 880,144 + Pf6N2E2_768 0.89 +0.1 880,145 - Pf6N2E2_768 0.90 -1.1 880,145 - Pf6N2E2_768 0.90 -0.9 880,206 + -0.9 880,207 - -0.6 880,207 - +0.5 880,207 - +0.1
Or see this region's nucleotide sequence