Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4441

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
5,172,394	-				-1.6
5,172,559	+				+0.5
5,172,559	+				+0.5
5,172,559	+				-1.1
5,172,559	+				+0.5
5,172,559	+				+0.5
5,172,559	+				+0.5
5,172,560	-				-1.5
5,172,789	+		Pf6N2E2_4440	0.43	+0.5
5,172,790	-		Pf6N2E2_4440	0.43	-1.5
5,172,853	-		Pf6N2E2_4440	0.54	+0.5
5,172,884	+		Pf6N2E2_4440	0.59	+0.5
5,172,884	+		Pf6N2E2_4440	0.59	-1.1
5,172,884	+		Pf6N2E2_4440	0.59	-1.1
5,172,885	-		Pf6N2E2_4440	0.59	-1.1
5,172,885	-		Pf6N2E2_4440	0.59	+0.5
5,172,885	-		Pf6N2E2_4440	0.59	-1.1
5,172,885	-		Pf6N2E2_4440	0.59	-1.0
5,172,885	-		Pf6N2E2_4440	0.59	-0.5
5,172,983	+		Pf6N2E2_4440	0.76	-0.5
5,172,983	+		Pf6N2E2_4440	0.76	-2.1
5,172,983	+		Pf6N2E2_4440	0.76	-0.5
5,172,984	-		Pf6N2E2_4440	0.76	+0.5
5,172,984	-		Pf6N2E2_4440	0.76	-1.1
5,172,984	-		Pf6N2E2_4440	0.76	-0.5
5,173,038	+		Pf6N2E2_4440	0.86	-0.5
5,173,038	+		Pf6N2E2_4440	0.86	-1.5
5,173,118	+				-0.5
5,173,118	+				+0.5
5,173,130	-				+0.5
5,173,180	-				-0.5
5,173,224	+				-0.6
5,173,224	+				-0.5
5,173,224	+				+0.4
5,173,224	+				+0.4
5,173,224	+				+0.4
5,173,225	-				-1.6
5,173,225	-				-0.8
5,173,225	-				-0.6
5,173,225	-				-1.1
5,173,225	-				-0.6
5,173,225	-				+0.4
5,173,229	+				-1.1
5,173,230	-				-0.6
5,173,480	+		Pf6N2E2_4441	0.34	+0.4
5,173,480	+		Pf6N2E2_4441	0.34	-0.6
5,173,481	-		Pf6N2E2_4441	0.34	-1.1
5,173,481	-		Pf6N2E2_4441	0.34	-0.6
5,173,481	-		Pf6N2E2_4441	0.34	+0.4
5,173,481	-		Pf6N2E2_4441	0.34	+0.4
5,173,481	-		Pf6N2E2_4441	0.34	-0.6
5,173,507	+		Pf6N2E2_4441	0.38	-0.6
5,173,507	+		Pf6N2E2_4441	0.38	-1.0
5,173,516	+		Pf6N2E2_4441	0.40	-0.6
5,173,587	+		Pf6N2E2_4441	0.51	+0.4
5,173,708	+		Pf6N2E2_4441	0.70	-2.4
5,173,709	-		Pf6N2E2_4441	0.70	+0.4
5,173,709	-		Pf6N2E2_4441	0.70	+0.4
5,173,709	-		Pf6N2E2_4441	0.70	-0.6
5,173,709	-		Pf6N2E2_4441	0.70	-0.6
5,173,709	-		Pf6N2E2_4441	0.70	+0.4
5,173,763	-		Pf6N2E2_4441	0.79	+0.4
5,173,801	-		Pf6N2E2_4441	0.85	-0.6
5,173,801	-		Pf6N2E2_4441	0.85	-1.9
5,173,801	-		Pf6N2E2_4441	0.85	-0.4
5,173,895	-				-0.6
5,173,895	-				-0.6
5,173,903	+				+0.0
5,173,904	-				+0.4
5,173,905	+				+0.4
5,173,905	+				+0.4
5,173,905	+				+0.4
5,173,905	+				-0.7
5,173,905	+				-0.6
5,173,905	+				-0.3
5,173,905	+				-0.6
5,173,905	+				-1.1
5,173,905	+				+0.4
5,173,906	-				-0.1
5,173,906	-				+0.6
5,173,906	-				-0.8
5,173,906	-				-0.6
5,173,906	-				-0.6
5,173,906	-				-0.6
5,174,020	+				-1.9
5,174,020	+				-1.6
5,174,020	+				-0.1
5,174,021	-				+0.4
5,174,021	-				+0.4
5,174,109	+				-0.2
5,174,109	+				-1.1
5,174,109	+				-1.1
5,174,110	-				-2.4
5,174,110	-				+0.4
5,174,110	-				+0.4
5,174,110	-				+0.4
5,174,110	-				-0.4
5,174,110	-				-0.5
5,174,110	-				-0.5
5,174,281	-		Pf6N2E2_4442	0.33	-1.4
5,174,281	-		Pf6N2E2_4442	0.33	-0.4
5,174,281	-		Pf6N2E2_4442	0.33	-0.5
5,174,340	+		Pf6N2E2_4442	0.40	+0.4
5,174,340	+		Pf6N2E2_4442	0.40	+0.4
5,174,340	+		Pf6N2E2_4442	0.40	-0.5
5,174,341	-		Pf6N2E2_4442	0.41	-0.4
5,174,341	-		Pf6N2E2_4442	0.41	-0.6
5,174,341	-		Pf6N2E2_4442	0.41	+0.4
5,174,412	+		Pf6N2E2_4442	0.50	-1.0
5,174,412	+		Pf6N2E2_4442	0.50	-1.1
5,174,413	-		Pf6N2E2_4442	0.50	+0.4
5,174,413	-		Pf6N2E2_4442	0.50	+0.4
5,174,460	+		Pf6N2E2_4442	0.57	-0.6
5,174,461	-		Pf6N2E2_4442	0.57	+0.4
5,174,461	-		Pf6N2E2_4442	0.57	-0.8
5,174,461	-		Pf6N2E2_4442	0.57	-1.6
5,174,488	-		Pf6N2E2_4442	0.60	-0.6
5,174,580	+		Pf6N2E2_4442	0.73	+0.7
5,174,580	+		Pf6N2E2_4442	0.73	-1.6
5,174,580	+		Pf6N2E2_4442	0.73	+0.4
5,174,580	+		Pf6N2E2_4442	0.73	+0.4
5,174,580	+		Pf6N2E2_4442	0.73	+0.4
5,174,580	+		Pf6N2E2_4442	0.73	-0.6
5,174,581	-		Pf6N2E2_4442	0.73	-0.6
5,174,581	-		Pf6N2E2_4442	0.73	-0.6
5,174,581	-		Pf6N2E2_4442	0.73	-1.9
5,174,581	-		Pf6N2E2_4442	0.73	-0.6
5,174,581	-		Pf6N2E2_4442	0.73	+0.4
5,174,581	-		Pf6N2E2_4442	0.73	-1.1
5,174,581	-		Pf6N2E2_4442	0.73	-0.5
5,174,581	-		Pf6N2E2_4442	0.73	-0.6
5,174,607	+		Pf6N2E2_4442	0.76	-0.4
5,174,608	-		Pf6N2E2_4442	0.76	+0.4
5,174,608	-		Pf6N2E2_4442	0.76	+0.4
5,174,632	-		Pf6N2E2_4442	0.80	-0.8
5,174,632	-		Pf6N2E2_4442	0.80	-0.5
5,174,632	-		Pf6N2E2_4442	0.80	-1.6
5,174,676	+		Pf6N2E2_4442	0.86	-1.9
5,174,676	+		Pf6N2E2_4442	0.86	-0.6
5,174,676	+		Pf6N2E2_4442	0.86	+0.4
5,174,676	+		Pf6N2E2_4442	0.86	-0.5
5,174,676	+		Pf6N2E2_4442	0.86	-0.0
5,174,676	+		Pf6N2E2_4442	0.86	-0.7
5,174,676	+		Pf6N2E2_4442	0.86	+0.4
5,174,676	+		Pf6N2E2_4442	0.86	-0.6
5,174,677	-		Pf6N2E2_4442	0.86	-0.6
5,174,677	-		Pf6N2E2_4442	0.86	-0.6
5,174,677	-		Pf6N2E2_4442	0.86	-0.7
5,174,677	-		Pf6N2E2_4442	0.86	-0.6
5,174,677	-		Pf6N2E2_4442	0.86	-0.1
5,174,677	-		Pf6N2E2_4442	0.86	+0.4
5,174,697	+		Pf6N2E2_4442	0.88	-0.4
5,174,768	+				+0.4
5,174,768	+				-0.6
5,174,769	-				-0.5
5,174,874	+		Pf6N2E2_4443	0.15	+0.4
5,174,874	+		Pf6N2E2_4443	0.15	+0.4
5,174,889	+		Pf6N2E2_4443	0.18	+0.4
5,174,889	+		Pf6N2E2_4443	0.18	-0.3
5,174,889	+		Pf6N2E2_4443	0.18	-0.6
5,174,890	-		Pf6N2E2_4443	0.18	-1.6
5,174,890	-		Pf6N2E2_4443	0.18	-0.6
5,174,890	-		Pf6N2E2_4443	0.18	-0.6