Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1213

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,418,834	+		Pf6N2E2_1212	0.12	+0.2
1,418,834	+		Pf6N2E2_1212	0.12	+0.2
1,418,834	+		Pf6N2E2_1212	0.12	+0.2
1,419,095	-		Pf6N2E2_1212	0.42	-0.8
1,419,154	-		Pf6N2E2_1212	0.49	+0.2
1,419,175	+		Pf6N2E2_1212	0.51	-1.4
1,419,175	+		Pf6N2E2_1212	0.51	-1.8
1,419,175	+		Pf6N2E2_1212	0.51	-0.8
1,419,176	-		Pf6N2E2_1212	0.51	+0.2
1,419,305	+		Pf6N2E2_1212	0.66	-1.9
1,419,306	-		Pf6N2E2_1212	0.67	+0.2
1,419,306	-		Pf6N2E2_1212	0.67	-0.4
1,419,512	+				-0.4
1,419,512	+				-0.3
1,419,542	+				+0.2
1,419,542	+				-0.2
1,419,542	+				+0.2
1,419,542	+				+0.2
1,419,542	+				+0.2
1,419,543	-				-0.4
1,419,543	-				+0.2
1,419,543	-				-0.2
1,419,585	+				+0.2
1,419,586	-				+0.2
1,419,688	+		Pf6N2E2_1213	0.13	+0.2
1,419,688	+		Pf6N2E2_1213	0.13	+0.5
1,419,688	+		Pf6N2E2_1213	0.13	+0.2
1,419,689	-		Pf6N2E2_1213	0.14	+0.2
1,419,689	-		Pf6N2E2_1213	0.14	+0.2
1,420,157	-		Pf6N2E2_1214	0.70	-1.4
1,420,276	+				+0.2
1,420,277	-				+0.2
1,420,277	-				-1.0
1,420,277	-				+0.2
1,420,528	+				-0.8
1,420,528	+				+0.2
1,420,528	+				+0.2
1,420,529	-				+0.2
1,420,529	-				+0.5
1,420,529	-				+1.6
1,420,529	-				+0.2
1,420,560	+		Pf6N2E2_1215	0.14	+0.4
1,420,601	-		Pf6N2E2_1215	0.21	+0.2
1,420,702	-		Pf6N2E2_1215	0.37	-0.9
1,420,702	-		Pf6N2E2_1215	0.37	+0.2