Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3800

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
4,426,640	+		Pf6N2E2_3799	0.68	-1.1
4,426,725	-		Pf6N2E2_3799	0.73	+0.5
4,426,731	+		Pf6N2E2_3799	0.74	+0.5
4,426,731	+		Pf6N2E2_3799	0.74	-1.1
4,426,731	+		Pf6N2E2_3799	0.74	-1.8
4,426,732	-		Pf6N2E2_3799	0.74	+0.5
4,426,742	-		Pf6N2E2_3799	0.74	+0.5
4,427,078	-				+0.5
4,427,078	-				-1.1
4,427,124	+				+0.3
4,427,125	-				-1.1
4,427,125	-				-1.1
4,427,137	+				-0.8
4,427,137	+				+0.5
4,427,137	+				-1.0
4,427,137	+				-0.5
4,427,137	+				+0.5
4,427,137	+				-1.8
4,427,137	+				-0.5
4,427,137	+				-1.1
4,427,137	+				+0.5
4,427,137	+				-1.5
4,427,137	+				+0.5
4,427,137	+				-0.5
4,427,138	-				-0.9
4,427,138	-				-0.5
4,427,138	-				+0.5
4,427,138	-				-0.5
4,427,138	-				-0.6
4,427,138	-				-1.5
4,427,138	-				+0.5
4,427,138	-				-0.5
4,427,138	-				-0.5
4,427,138	-				-1.1
4,427,138	-				+0.5
4,427,138	-				+0.5
4,427,138	-				-0.3
4,427,138	-				-0.8
4,427,138	-				+0.5
4,427,225	+				+0.5
4,427,234	+				-1.1
4,427,234	+				+0.5
4,427,235	-				-1.6
4,427,235	-				-0.2
4,427,235	-				-0.9
4,427,235	-				-0.3
4,427,235	-				-0.5
4,427,235	-				+0.5
4,427,235	-				+1.5
4,427,283	+				+0.5
4,427,629	+		Pf6N2E2_3800	0.24	-1.1
4,427,948	+		Pf6N2E2_3800	0.45	-0.5
4,427,966	+		Pf6N2E2_3800	0.46	-1.5
4,428,457	+		Pf6N2E2_3800	0.78	-1.1
4,428,458	-		Pf6N2E2_3800	0.78	-0.5
4,428,458	-		Pf6N2E2_3800	0.78	-0.6
4,428,458	-		Pf6N2E2_3800	0.78	+0.5
4,428,458	-		Pf6N2E2_3800	0.78	+0.5
4,428,458	-		Pf6N2E2_3800	0.78	-0.6
4,428,479	+		Pf6N2E2_3800	0.80	+0.5
4,428,766	-				+0.5
4,429,003	+				+0.1
4,429,003	+				-0.3
4,429,003	+				-0.5
4,429,004	-				+0.1
4,429,004	-				-0.5
4,429,300	+		Pf6N2E2_3801	0.41	+0.5
4,429,301	-		Pf6N2E2_3801	0.41	-0.8
4,429,541	+		Pf6N2E2_3801	0.70	+0.3
4,429,541	+		Pf6N2E2_3801	0.70	+0.5
4,429,541	+		Pf6N2E2_3801	0.70	+0.5
4,429,697	+		Pf6N2E2_3801	0.88	+0.5
4,429,697	+		Pf6N2E2_3801	0.88	-0.5
4,429,697	+		Pf6N2E2_3801	0.88	-0.5