Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3562

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
4,152,460	+		Pf6N2E2_3560	0.65	+0.5
4,152,460	+		Pf6N2E2_3560	0.65	+0.1
4,152,460	+		Pf6N2E2_3560	0.65	-0.1
4,152,461	-		Pf6N2E2_3560	0.65	+0.5
4,152,461	-		Pf6N2E2_3560	0.65	-0.5
4,152,815	+				-1.5
4,152,815	+				+0.5
4,152,815	+				+0.5
4,152,816	-				-0.5
4,152,816	-				-0.5
4,152,816	-				-1.5
4,152,816	-				+0.5
4,152,887	+				-0.9
4,152,887	+				+0.5
4,152,887	+				-0.5
4,152,921	+				+0.7
4,153,036	-				-1.1
4,153,124	-		Pf6N2E2_3561	0.31	-0.3
4,153,124	-		Pf6N2E2_3561	0.31	-0.3
4,153,280	+		Pf6N2E2_3561	0.85	+0.5
4,153,281	-		Pf6N2E2_3561	0.86	-0.5
4,153,370	+				+0.5
4,153,371	-				+0.5
4,153,384	+				+0.5
4,153,384	+				+0.5
4,153,384	+				-0.9
4,153,385	-				+0.5
4,153,385	-				+0.5
4,153,385	-				-0.5
4,153,385	-				-0.5
4,153,461	-				-0.4
4,153,610	+		Pf6N2E2_3562	0.17	-1.5
4,153,666	+		Pf6N2E2_3562	0.23	+0.1
4,153,748	+		Pf6N2E2_3562	0.32	+2.1
4,153,748	+		Pf6N2E2_3562	0.32	+0.5
4,153,748	+		Pf6N2E2_3562	0.32	+0.5
4,153,748	+		Pf6N2E2_3562	0.32	+0.5
4,153,748	+		Pf6N2E2_3562	0.32	-0.7
4,153,749	-		Pf6N2E2_3562	0.33	-0.5
4,153,749	-		Pf6N2E2_3562	0.33	+1.1
4,153,749	-		Pf6N2E2_3562	0.33	-0.5
4,153,749	-		Pf6N2E2_3562	0.33	+0.5
4,153,749	-		Pf6N2E2_3562	0.33	+0.2
4,153,749	-		Pf6N2E2_3562	0.33	-0.5
4,153,751	+		Pf6N2E2_3562	0.33	-1.1
4,153,873	-		Pf6N2E2_3562	0.46	+0.5
4,153,998	-		Pf6N2E2_3562	0.60	-0.0
4,154,273	+				+0.5
4,154,273	+				+0.5
4,154,273	+				+0.5
4,154,273	+				+0.7
4,154,273	+				+0.5
4,154,274	-				+0.5
4,154,274	-				+0.5
4,154,274	-				+0.5
4,154,274	-				+0.5
4,154,274	-				+0.5
4,154,274	-				-0.5
4,154,274	-				-0.1
4,154,274	-				-0.5
4,154,274	-				+0.5
4,154,288	-				-0.5
4,154,314	+				-0.5
4,154,315	-				+0.5
4,154,404	+				-0.4
4,154,404	+				-0.5
4,154,404	+				-0.5
4,154,404	+				+0.5
4,154,405	-				+0.5
4,154,448	-				-1.1
4,154,715	+		Pf6N2E2_3563	0.39	-0.7
4,154,925	+		Pf6N2E2_3563	0.72	-0.3
4,154,925	+		Pf6N2E2_3563	0.72	-1.5
4,154,967	-		Pf6N2E2_3563	0.78	+0.5
4,154,967	-		Pf6N2E2_3563	0.78	+0.5
4,155,100	+				-0.5
4,155,100	+				-0.5
4,155,101	-				+0.5
4,155,128	+				-0.5
4,155,144	+				-1.5
4,155,144	+				+0.5
4,155,144	+				+0.5
4,155,145	-				+0.5
4,155,193	-				+0.5
4,155,211	-				+0.5