Strain Fitness in Agrobacterium fabrum C58 around Atu1381
Experiment: Streptomycin 200 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Streptomycin 200 ug/mL |
|---|---|---|---|---|---|
| remove | |||||
| 1,373,804 | + | Atu1380 | 0.55 | -1.2 | |
| 1,373,819 | - | Atu1380 | 0.56 | -0.8 | |
| 1,373,830 | + | Atu1380 | 0.57 | -1.6 | |
| 1,373,936 | + | Atu1380 | 0.67 | -1.2 | |
| 1,373,936 | + | Atu1380 | 0.67 | -0.3 | |
| 1,373,944 | - | Atu1380 | 0.67 | -1.2 | |
| 1,374,004 | - | Atu1380 | 0.73 | -1.0 | |
| 1,374,131 | + | Atu1380 | 0.84 | -1.8 | |
| 1,374,131 | + | Atu1380 | 0.84 | -1.5 | |
| 1,374,145 | - | Atu1380 | 0.85 | -1.7 | |
| 1,374,209 | + | -2.1 | |||
| 1,374,291 | + | -1.8 | |||
| 1,376,869 | + | +1.0 |
Or see this region's nucleotide sequence