Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3236 and Atu3237 are separated by 17 nucleotides Atu3237 and Atu3238 overlap by 8 nucleotides Atu3238 and Atu3239 are separated by 71 nucleotides
Atu3236: Atu3236 - sugar ABC transporter ATPase, at 252,535 to 253,608
Atu3236
Atu3237: Atu3237 - sugar ABC transporter permease, at 253,626 to 254,474
Atu3237
Atu3238: Atu3238 - sugar ABC transporter permease, at 254,467 to 255,399
Atu3238
Atu3239: Atu3239 - sugar ABC transporter substrate-binding protein, at 255,471 to 256,772
Atu3239
Position (kb) 253
254
255 Strain fitness (log2 ratio) -2
-1
0
1
2 at 252.637 kb on - strand at 252.656 kb on - strand, within Atu3236 at 252.678 kb on - strand, within Atu3236 at 252.687 kb on - strand, within Atu3236 at 252.713 kb on + strand, within Atu3236 at 252.799 kb on - strand, within Atu3236 at 252.878 kb on + strand, within Atu3236 at 252.993 kb on + strand, within Atu3236 at 253.029 kb on + strand, within Atu3236 at 253.029 kb on + strand, within Atu3236 at 253.045 kb on + strand, within Atu3236 at 253.053 kb on - strand, within Atu3236 at 253.076 kb on + strand, within Atu3236 at 253.172 kb on - strand, within Atu3236 at 253.286 kb on + strand, within Atu3236 at 253.312 kb on - strand, within Atu3236 at 253.319 kb on - strand, within Atu3236 at 253.361 kb on - strand, within Atu3236 at 253.397 kb on - strand, within Atu3236 at 253.411 kb on - strand, within Atu3236 at 253.474 kb on - strand, within Atu3236 at 253.584 kb on - strand at 253.688 kb on - strand at 253.766 kb on + strand, within Atu3237 at 253.892 kb on + strand, within Atu3237 at 254.074 kb on + strand, within Atu3237 at 254.165 kb on + strand, within Atu3237 at 254.175 kb on + strand, within Atu3237 at 254.212 kb on - strand, within Atu3237 at 254.271 kb on + strand, within Atu3237 at 254.431 kb on - strand at 254.463 kb on - strand at 254.468 kb on + strand at 254.582 kb on + strand, within Atu3238 at 254.590 kb on - strand, within Atu3238 at 254.590 kb on - strand, within Atu3238 at 254.597 kb on + strand, within Atu3238 at 254.674 kb on - strand, within Atu3238 at 254.702 kb on - strand, within Atu3238 at 254.711 kb on + strand, within Atu3238 at 254.729 kb on - strand, within Atu3238 at 254.847 kb on + strand, within Atu3238 at 254.862 kb on + strand, within Atu3238 at 254.870 kb on - strand, within Atu3238 at 255.110 kb on - strand, within Atu3238 at 255.224 kb on + strand, within Atu3238 at 255.224 kb on + strand, within Atu3238 at 255.224 kb on + strand, within Atu3238 at 255.227 kb on - strand, within Atu3238
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 252,637 - +0.0 252,656 - Atu3236 0.11 -1.4 252,678 - Atu3236 0.13 +0.8 252,687 - Atu3236 0.14 -0.0 252,713 + Atu3236 0.17 +1.9 252,799 - Atu3236 0.25 +0.3 252,878 + Atu3236 0.32 +1.5 252,993 + Atu3236 0.43 +1.0 253,029 + Atu3236 0.46 +1.5 253,029 + Atu3236 0.46 +1.7 253,045 + Atu3236 0.47 +0.0 253,053 - Atu3236 0.48 -0.9 253,076 + Atu3236 0.50 -0.6 253,172 - Atu3236 0.59 -1.7 253,286 + Atu3236 0.70 +0.3 253,312 - Atu3236 0.72 -0.3 253,319 - Atu3236 0.73 -2.2 253,361 - Atu3236 0.77 -0.4 253,397 - Atu3236 0.80 +0.5 253,411 - Atu3236 0.82 -0.2 253,474 - Atu3236 0.87 -2.0 253,584 - +0.3 253,688 - -0.1 253,766 + Atu3237 0.16 +0.9 253,892 + Atu3237 0.31 -1.2 254,074 + Atu3237 0.53 +0.0 254,165 + Atu3237 0.63 -0.8 254,175 + Atu3237 0.65 +1.9 254,212 - Atu3237 0.69 -1.0 254,271 + Atu3237 0.76 -0.2 254,431 - -0.4 254,463 - -0.2 254,468 + -1.4 254,582 + Atu3238 0.12 -0.9 254,590 - Atu3238 0.13 +1.6 254,590 - Atu3238 0.13 -0.7 254,597 + Atu3238 0.14 +0.0 254,674 - Atu3238 0.22 -0.8 254,702 - Atu3238 0.25 -0.1 254,711 + Atu3238 0.26 +0.4 254,729 - Atu3238 0.28 -0.3 254,847 + Atu3238 0.41 +0.2 254,862 + Atu3238 0.42 -2.2 254,870 - Atu3238 0.43 +0.9 255,110 - Atu3238 0.69 -1.8 255,224 + Atu3238 0.81 -1.1 255,224 + Atu3238 0.81 +0.2 255,224 + Atu3238 0.81 -0.8 255,227 - Atu3238 0.81 -2.0
Or see this region's nucleotide sequence