Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3770 and Atu3771 are separated by 350 nucleotides Atu3771 and Atu3772 are separated by 57 nucleotides
Atu3770: Atu3770 - 5'-nucleotidase, at 852,488 to 854,398
Atu3770
Atu3771: Atu3771 - ferrochelatase, at 854,749 to 855,783
Atu3771
Atu3772: Atu3772 - hypothetical protein, at 855,841 to 856,890
Atu3772
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.838 kb on - strand, within Atu3770 at 853.875 kb on + strand, within Atu3770 at 853.918 kb on + strand, within Atu3770 at 853.918 kb on + strand, within Atu3770 at 853.926 kb on - strand, within Atu3770 at 853.926 kb on - strand, within Atu3770 at 853.958 kb on + strand, within Atu3770 at 853.965 kb on + strand, within Atu3770 at 853.973 kb on - strand, within Atu3770 at 854.036 kb on + strand, within Atu3770 at 854.044 kb on - strand, within Atu3770 at 854.073 kb on - strand, within Atu3770 at 854.128 kb on + strand, within Atu3770 at 854.134 kb on + strand, within Atu3770 at 854.230 kb on - strand at 854.340 kb on + strand at 854.342 kb on - strand at 854.490 kb on + strand at 854.623 kb on - strand at 854.630 kb on + strand at 854.684 kb on + strand at 854.684 kb on + strand at 855.776 kb on + strand at 855.831 kb on - strand at 855.865 kb on - strand at 855.915 kb on + strand at 855.923 kb on - strand at 855.923 kb on - strand at 855.933 kb on + strand at 855.949 kb on + strand, within Atu3772 at 856.040 kb on + strand, within Atu3772 at 856.285 kb on + strand, within Atu3772 at 856.359 kb on - strand, within Atu3772 at 856.391 kb on - strand, within Atu3772 at 856.513 kb on - strand, within Atu3772 at 856.565 kb on + strand, within Atu3772 at 856.608 kb on - strand, within Atu3772 at 856.614 kb on - strand, within Atu3772 at 856.700 kb on + strand, within Atu3772 at 856.772 kb on - strand, within Atu3772 at 856.779 kb on - strand, within Atu3772
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 853,838 - Atu3770 0.71 -0.4 853,875 + Atu3770 0.73 -0.7 853,918 + Atu3770 0.75 +1.5 853,918 + Atu3770 0.75 -0.1 853,926 - Atu3770 0.75 -2.6 853,926 - Atu3770 0.75 -0.3 853,958 + Atu3770 0.77 +0.0 853,965 + Atu3770 0.77 -0.4 853,973 - Atu3770 0.78 +1.8 854,036 + Atu3770 0.81 +0.4 854,044 - Atu3770 0.81 +0.1 854,073 - Atu3770 0.83 +0.3 854,128 + Atu3770 0.86 -0.4 854,134 + Atu3770 0.86 +0.1 854,230 - +0.3 854,340 + +0.9 854,342 - -1.3 854,490 + -0.6 854,623 - +0.9 854,630 + -0.4 854,684 + +0.7 854,684 + -1.4 855,776 + -0.9 855,831 - +2.0 855,865 - -0.6 855,915 + -0.4 855,923 - -1.2 855,923 - -1.6 855,933 + -0.2 855,949 + Atu3772 0.10 -1.8 856,040 + Atu3772 0.19 -1.2 856,285 + Atu3772 0.42 +0.8 856,359 - Atu3772 0.49 -0.5 856,391 - Atu3772 0.52 +1.6 856,513 - Atu3772 0.64 -0.7 856,565 + Atu3772 0.69 -1.4 856,608 - Atu3772 0.73 -0.5 856,614 - Atu3772 0.74 +0.7 856,700 + Atu3772 0.82 +0.6 856,772 - Atu3772 0.89 -2.3 856,779 - Atu3772 0.89 +0.3
Or see this region's nucleotide sequence