Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1472 and Atu1473 are separated by 30 nucleotides Atu1473 and Atu1474 are separated by 60 nucleotides Atu1474 and Atu1475 are separated by 233 nucleotides Atu1475 and Atu1476 are separated by 60 nucleotides
Atu1472: Atu1472 - hydrolase, at 1,466,678 to 1,467,346
Atu1472
Atu1473: Atu1473 - hypothetical protein, at 1,467,377 to 1,468,171
Atu1473
Atu1474: Atu1474 - hypothetical protein, at 1,468,232 to 1,468,720
Atu1474
Atu1475: Atu1475 - hypothetical protein, at 1,468,954 to 1,469,343
Atu1475
Atu1476: Atu1476 - esterase D, at 1,469,404 to 1,470,237
Atu1476
Position (kb)
1468
1469 Strain fitness (log2 ratio)
-2
-1
0
1 at 1467.247 kb on - strand, within Atu1472 at 1467.265 kb on + strand, within Atu1472 at 1467.265 kb on + strand, within Atu1472 at 1467.265 kb on + strand, within Atu1472 at 1467.265 kb on + strand, within Atu1472 at 1467.265 kb on + strand, within Atu1472 at 1467.298 kb on - strand at 1467.408 kb on + strand at 1468.206 kb on + strand at 1468.210 kb on + strand at 1468.298 kb on - strand, within Atu1474 at 1468.330 kb on + strand, within Atu1474 at 1468.338 kb on - strand, within Atu1474 at 1468.338 kb on - strand, within Atu1474 at 1468.374 kb on - strand, within Atu1474 at 1468.439 kb on + strand, within Atu1474 at 1468.745 kb on + strand at 1469.109 kb on + strand, within Atu1475 at 1469.190 kb on + strand, within Atu1475 at 1469.292 kb on - strand, within Atu1475 at 1469.352 kb on - strand at 1469.382 kb on + strand at 1469.401 kb on + strand at 1469.406 kb on + strand at 1469.511 kb on - strand, within Atu1476 at 1469.528 kb on - strand, within Atu1476 at 1469.573 kb on + strand, within Atu1476 at 1469.581 kb on - strand, within Atu1476 at 1469.696 kb on - strand, within Atu1476
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 1,467,247 - Atu1472 0.85 -0.3 1,467,265 + Atu1472 0.88 -0.3 1,467,265 + Atu1472 0.88 +0.1 1,467,265 + Atu1472 0.88 +1.6 1,467,265 + Atu1472 0.88 -0.7 1,467,265 + Atu1472 0.88 +1.1 1,467,298 - -2.0 1,467,408 + +1.3 1,468,206 + -2.4 1,468,210 + -0.4 1,468,298 - Atu1474 0.13 -1.5 1,468,330 + Atu1474 0.20 -0.9 1,468,338 - Atu1474 0.22 +0.2 1,468,338 - Atu1474 0.22 -1.9 1,468,374 - Atu1474 0.29 -0.6 1,468,439 + Atu1474 0.42 -1.1 1,468,745 + -1.2 1,469,109 + Atu1475 0.40 +0.3 1,469,190 + Atu1475 0.61 +0.1 1,469,292 - Atu1475 0.87 +0.5 1,469,352 - -0.4 1,469,382 + -1.4 1,469,401 + +1.4 1,469,406 + -0.3 1,469,511 - Atu1476 0.13 -0.2 1,469,528 - Atu1476 0.15 +0.2 1,469,573 + Atu1476 0.20 +0.3 1,469,581 - Atu1476 0.21 -0.2 1,469,696 - Atu1476 0.35 +0.6
Or see this region's nucleotide sequence