Experiment: Bethi_Library_OD1.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0160 and Atu0161 are separated by 265 nucleotides Atu0161 and Atu0162 are separated by 6 nucleotides Atu0162 and Atu0163 overlap by 4 nucleotides
Atu0160: Atu0160 - transcriptional regulator, GntR family, at 165,739 to 166,476
Atu0160
Atu0161: Atu0161 - biopolymer transport protein, at 166,742 to 167,764
Atu0161
Atu0162: Atu0162 - biopolymer transport protein, at 167,771 to 168,274
Atu0162
Atu0163: Atu0163 - tonB protein, at 168,271 to 169,194
Atu0163
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 165.799 kb on + strand at 165.818 kb on - strand, within Atu0160 at 165.839 kb on + strand, within Atu0160 at 165.885 kb on + strand, within Atu0160 at 165.926 kb on - strand, within Atu0160 at 165.933 kb on + strand, within Atu0160 at 166.046 kb on - strand, within Atu0160 at 166.069 kb on - strand, within Atu0160 at 166.107 kb on - strand, within Atu0160 at 166.137 kb on + strand, within Atu0160 at 166.282 kb on + strand, within Atu0160 at 166.452 kb on + strand at 166.452 kb on + strand at 166.700 kb on + strand at 166.753 kb on - strand at 166.783 kb on - strand at 166.810 kb on + strand at 166.897 kb on + strand, within Atu0161 at 166.912 kb on + strand, within Atu0161 at 166.920 kb on - strand, within Atu0161 at 166.920 kb on - strand, within Atu0161 at 166.926 kb on + strand, within Atu0161 at 166.934 kb on - strand, within Atu0161 at 166.934 kb on - strand, within Atu0161 at 166.968 kb on - strand, within Atu0161 at 167.022 kb on + strand, within Atu0161 at 167.090 kb on + strand, within Atu0161 at 167.099 kb on + strand, within Atu0161 at 167.175 kb on - strand, within Atu0161 at 167.254 kb on + strand, within Atu0161 at 167.346 kb on + strand, within Atu0161 at 167.346 kb on + strand, within Atu0161 at 167.354 kb on - strand, within Atu0161 at 167.380 kb on + strand, within Atu0161 at 167.464 kb on + strand, within Atu0161 at 167.474 kb on + strand, within Atu0161 at 167.482 kb on - strand, within Atu0161 at 167.618 kb on + strand, within Atu0161 at 167.626 kb on - strand, within Atu0161 at 167.663 kb on + strand at 167.837 kb on + strand, within Atu0162 at 168.038 kb on + strand, within Atu0162 at 168.038 kb on + strand, within Atu0162 at 168.126 kb on + strand, within Atu0162 at 168.204 kb on - strand, within Atu0162 at 168.236 kb on - strand at 168.256 kb on + strand at 168.256 kb on + strand at 168.261 kb on + strand at 168.262 kb on - strand at 168.322 kb on + strand at 168.348 kb on - strand at 168.420 kb on + strand, within Atu0163 at 168.489 kb on + strand, within Atu0163 at 168.497 kb on - strand, within Atu0163 at 168.562 kb on + strand, within Atu0163 at 168.600 kb on + strand, within Atu0163 at 168.729 kb on + strand, within Atu0163
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD1.0 remove 165,799 + +0.1 165,818 - Atu0160 0.11 -0.1 165,839 + Atu0160 0.14 -0.1 165,885 + Atu0160 0.20 -0.1 165,926 - Atu0160 0.25 +0.2 165,933 + Atu0160 0.26 -0.5 166,046 - Atu0160 0.42 +0.1 166,069 - Atu0160 0.45 +0.3 166,107 - Atu0160 0.50 +0.4 166,137 + Atu0160 0.54 +0.3 166,282 + Atu0160 0.74 +0.5 166,452 + +0.5 166,452 + -0.1 166,700 + -2.0 166,753 - -2.5 166,783 - -2.0 166,810 + -3.1 166,897 + Atu0161 0.15 -3.1 166,912 + Atu0161 0.17 -2.8 166,920 - Atu0161 0.17 -2.2 166,920 - Atu0161 0.17 -3.2 166,926 + Atu0161 0.18 -1.4 166,934 - Atu0161 0.19 -2.3 166,934 - Atu0161 0.19 -1.8 166,968 - Atu0161 0.22 -1.7 167,022 + Atu0161 0.27 -2.1 167,090 + Atu0161 0.34 -2.5 167,099 + Atu0161 0.35 -2.4 167,175 - Atu0161 0.42 -3.5 167,254 + Atu0161 0.50 -0.5 167,346 + Atu0161 0.59 -2.9 167,346 + Atu0161 0.59 -1.2 167,354 - Atu0161 0.60 -2.1 167,380 + Atu0161 0.62 -2.9 167,464 + Atu0161 0.71 -3.0 167,474 + Atu0161 0.72 -1.3 167,482 - Atu0161 0.72 +0.5 167,618 + Atu0161 0.86 -0.3 167,626 - Atu0161 0.86 -0.8 167,663 + +0.9 167,837 + Atu0162 0.13 -3.5 168,038 + Atu0162 0.53 -1.7 168,038 + Atu0162 0.53 -2.8 168,126 + Atu0162 0.70 -0.1 168,204 - Atu0162 0.86 -1.3 168,236 - -1.0 168,256 + +1.5 168,256 + -0.2 168,261 + -0.5 168,262 - +0.0 168,322 + -2.2 168,348 - -3.2 168,420 + Atu0163 0.16 -2.1 168,489 + Atu0163 0.24 -0.1 168,497 - Atu0163 0.24 -2.9 168,562 + Atu0163 0.31 -3.6 168,600 + Atu0163 0.36 -2.6 168,729 + Atu0163 0.50 -3.6
Or see this region's nucleotide sequence