Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_649 and Pf6N2E2_650 are separated by 16 nucleotides Pf6N2E2_650 and Pf6N2E2_651 overlap by 4 nucleotides Pf6N2E2_651 and Pf6N2E2_652 are separated by 172 nucleotides
Pf6N2E2_649 - General secretion pathway protein L, at 737,663 to 738,835
_649
Pf6N2E2_650 - General secretion pathway protein M, at 738,852 to 739,400
_650
Pf6N2E2_651 - General secretion pathway protein D, at 739,397 to 741,760
_651
Pf6N2E2_652 - General secretion pathway protein E, at 741,933 to 743,351
_652
Position (kb) 739
740
741
742 Strain fitness (log2 ratio) -1
0
1
2 at 738.413 kb on + strand, within Pf6N2E2_649 at 738.834 kb on - strand at 738.834 kb on - strand at 739.008 kb on + strand, within Pf6N2E2_650 at 739.152 kb on + strand, within Pf6N2E2_650 at 739.152 kb on + strand, within Pf6N2E2_650 at 739.153 kb on - strand, within Pf6N2E2_650 at 739.153 kb on - strand, within Pf6N2E2_650 at 739.153 kb on - strand, within Pf6N2E2_650 at 739.156 kb on + strand, within Pf6N2E2_650 at 739.157 kb on - strand, within Pf6N2E2_650 at 739.597 kb on + strand at 739.946 kb on + strand, within Pf6N2E2_651 at 739.947 kb on - strand, within Pf6N2E2_651 at 740.004 kb on - strand, within Pf6N2E2_651 at 740.354 kb on + strand, within Pf6N2E2_651 at 740.354 kb on + strand, within Pf6N2E2_651 at 740.354 kb on + strand, within Pf6N2E2_651 at 740.402 kb on + strand, within Pf6N2E2_651 at 740.522 kb on - strand, within Pf6N2E2_651 at 741.155 kb on + strand, within Pf6N2E2_651 at 741.155 kb on + strand, within Pf6N2E2_651 at 741.155 kb on + strand, within Pf6N2E2_651 at 741.156 kb on - strand, within Pf6N2E2_651 at 741.156 kb on - strand, within Pf6N2E2_651 at 741.156 kb on - strand, within Pf6N2E2_651 at 741.156 kb on - strand, within Pf6N2E2_651 at 741.278 kb on + strand, within Pf6N2E2_651 at 741.278 kb on + strand, within Pf6N2E2_651 at 741.278 kb on + strand, within Pf6N2E2_651 at 741.278 kb on + strand, within Pf6N2E2_651 at 741.279 kb on - strand, within Pf6N2E2_651 at 741.530 kb on + strand at 741.530 kb on + strand at 741.531 kb on - strand at 741.531 kb on - strand at 741.531 kb on - strand at 741.535 kb on + strand at 741.565 kb on + strand at 741.622 kb on + strand at 741.823 kb on + strand at 741.824 kb on - strand at 741.917 kb on + strand at 741.948 kb on + strand at 741.948 kb on + strand at 741.948 kb on + strand at 741.976 kb on + strand at 742.122 kb on + strand, within Pf6N2E2_652 at 742.123 kb on - strand, within Pf6N2E2_652 at 742.701 kb on + strand, within Pf6N2E2_652 at 742.701 kb on + strand, within Pf6N2E2_652 at 742.701 kb on + strand, within Pf6N2E2_652 at 742.702 kb on - strand, within Pf6N2E2_652
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 738,413 + Pf6N2E2_649 0.64 -0.2 738,834 - +0.8 738,834 - +0.8 739,008 + Pf6N2E2_650 0.28 -1.2 739,152 + Pf6N2E2_650 0.55 -0.2 739,152 + Pf6N2E2_650 0.55 -0.7 739,153 - Pf6N2E2_650 0.55 -0.2 739,153 - Pf6N2E2_650 0.55 +0.8 739,153 - Pf6N2E2_650 0.55 +0.8 739,156 + Pf6N2E2_650 0.55 -0.4 739,157 - Pf6N2E2_650 0.56 -0.2 739,597 + +1.8 739,946 + Pf6N2E2_651 0.23 -0.2 739,947 - Pf6N2E2_651 0.23 +0.8 740,004 - Pf6N2E2_651 0.26 -0.2 740,354 + Pf6N2E2_651 0.40 +0.8 740,354 + Pf6N2E2_651 0.40 +1.8 740,354 + Pf6N2E2_651 0.40 +0.8 740,402 + Pf6N2E2_651 0.43 +0.8 740,522 - Pf6N2E2_651 0.48 -0.2 741,155 + Pf6N2E2_651 0.74 +0.8 741,155 + Pf6N2E2_651 0.74 +0.8 741,155 + Pf6N2E2_651 0.74 +0.8 741,156 - Pf6N2E2_651 0.74 +1.6 741,156 - Pf6N2E2_651 0.74 -0.2 741,156 - Pf6N2E2_651 0.74 -1.2 741,156 - Pf6N2E2_651 0.74 -0.2 741,278 + Pf6N2E2_651 0.80 +0.3 741,278 + Pf6N2E2_651 0.80 +0.8 741,278 + Pf6N2E2_651 0.80 -0.7 741,278 + Pf6N2E2_651 0.80 +0.8 741,279 - Pf6N2E2_651 0.80 +0.8 741,530 + -1.1 741,530 + -1.0 741,531 - -1.0 741,531 - -0.2 741,531 - -0.2 741,535 + -0.7 741,565 + -1.1 741,622 + +0.8 741,823 + +0.8 741,824 - +0.8 741,917 + -0.2 741,948 + +0.8 741,948 + -0.2 741,948 + +0.8 741,976 + -0.2 742,122 + Pf6N2E2_652 0.13 +0.8 742,123 - Pf6N2E2_652 0.13 +0.8 742,701 + Pf6N2E2_652 0.54 -0.3 742,701 + Pf6N2E2_652 0.54 +0.8 742,701 + Pf6N2E2_652 0.54 +0.8 742,702 - Pf6N2E2_652 0.54 +0.8
Or see this region's nucleotide sequence