Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2932

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
3,422,747	-				-0.3
3,422,747	-				+1.0
3,422,788	+		Pf6N2E2_2931	0.10	-1.8
3,422,803	+		Pf6N2E2_2931	0.12	-0.0
3,422,803	+		Pf6N2E2_2931	0.12	-1.6
3,422,803	+		Pf6N2E2_2931	0.12	-0.0
3,422,804	-		Pf6N2E2_2931	0.12	+0.2
3,422,804	-		Pf6N2E2_2931	0.12	-0.0
3,422,804	-		Pf6N2E2_2931	0.12	+1.0
3,422,804	-		Pf6N2E2_2931	0.12	-0.0
3,422,804	-		Pf6N2E2_2931	0.12	+0.2
3,422,938	+		Pf6N2E2_2931	0.26	+1.0
3,422,938	+		Pf6N2E2_2931	0.26	-0.3
3,422,939	-		Pf6N2E2_2931	0.26	-0.1
3,422,939	-		Pf6N2E2_2931	0.26	+1.0
3,422,946	-		Pf6N2E2_2931	0.27	-0.6
3,422,998	+		Pf6N2E2_2931	0.32	-0.0
3,422,999	-		Pf6N2E2_2931	0.32	-1.3
3,422,999	-		Pf6N2E2_2931	0.32	-1.3
3,422,999	-		Pf6N2E2_2931	0.32	-0.8
3,423,022	+		Pf6N2E2_2931	0.35	-1.3
3,423,022	+		Pf6N2E2_2931	0.35	+1.0
3,423,023	-		Pf6N2E2_2931	0.35	-1.0
3,423,023	-		Pf6N2E2_2931	0.35	-1.0
3,423,029	+		Pf6N2E2_2931	0.35	-0.0
3,423,082	+		Pf6N2E2_2931	0.41	+1.0
3,423,253	+		Pf6N2E2_2931	0.59	+1.0
3,423,254	-		Pf6N2E2_2931	0.59	-0.0
3,423,258	-		Pf6N2E2_2931	0.59	+0.4
3,423,258	-		Pf6N2E2_2931	0.59	+1.0
3,423,258	-		Pf6N2E2_2931	0.59	-0.2
3,423,258	-		Pf6N2E2_2931	0.59	-0.6
3,423,338	+		Pf6N2E2_2931	0.68	+1.0
3,423,639	+				-0.7
3,423,672	+				+1.0
3,423,673	-				-1.3
3,423,673	-				+1.0
3,423,673	-				-0.2
3,424,047	+		Pf6N2E2_2932	0.56	-0.6
3,424,048	-		Pf6N2E2_2932	0.56	+0.6
3,424,048	-		Pf6N2E2_2932	0.56	+1.0
3,424,176	+		Pf6N2E2_2932	0.78	+1.6
3,424,176	+		Pf6N2E2_2932	0.78	-0.6
3,424,177	-		Pf6N2E2_2932	0.78	+1.0
3,424,199	+		Pf6N2E2_2932	0.81	+1.0
3,424,199	+		Pf6N2E2_2932	0.81	-0.0
3,424,199	+		Pf6N2E2_2932	0.81	-0.4
3,424,199	+		Pf6N2E2_2932	0.81	-1.0
3,424,199	+		Pf6N2E2_2932	0.81	+0.3
3,424,199	+		Pf6N2E2_2932	0.81	-0.6
3,424,200	-		Pf6N2E2_2932	0.82	-1.3
3,424,200	-		Pf6N2E2_2932	0.82	-0.0
3,424,200	-		Pf6N2E2_2932	0.82	+1.0
3,424,200	-		Pf6N2E2_2932	0.82	-0.4
3,424,200	-		Pf6N2E2_2932	0.82	-0.6
3,424,200	-		Pf6N2E2_2932	0.82	+1.0
3,424,200	-		Pf6N2E2_2932	0.82	+1.0
3,424,200	-		Pf6N2E2_2932	0.82	-0.0
3,424,200	-		Pf6N2E2_2932	0.82	+1.0
3,424,200	-		Pf6N2E2_2932	0.82	-0.2
3,424,200	-		Pf6N2E2_2932	0.82	-1.0
3,424,208	+		Pf6N2E2_2932	0.83	+1.0
3,424,208	+		Pf6N2E2_2932	0.83	+1.0
3,424,209	-		Pf6N2E2_2932	0.83	-0.0
3,424,209	-		Pf6N2E2_2932	0.83	+1.0
3,424,209	-		Pf6N2E2_2932	0.83	-1.0
3,424,209	-		Pf6N2E2_2932	0.83	-0.3
3,424,295	+				+1.0
3,424,296	-				+1.0
3,424,296	-				+1.0
3,424,406	-		Pf6N2E2_2933	0.19	+1.0
3,424,406	-		Pf6N2E2_2933	0.19	-1.0
3,424,472	+		Pf6N2E2_2933	0.39	-0.6
3,424,472	+		Pf6N2E2_2933	0.39	+1.0
3,424,638	+		Pf6N2E2_2933	0.90	+0.3
3,424,710	+				+1.0
3,424,721	+				-0.0
3,424,743	+				-0.0
3,424,744	-				-0.0
3,424,788	+				-0.6
3,424,788	+				-0.0
3,424,834	+				+1.0
3,424,834	+				-1.7
3,424,834	+				+1.0
3,424,835	-				-0.0
3,424,835	-				-1.0
3,424,835	-				-0.6
3,424,839	+				+1.0
3,424,839	+				-1.0
3,424,839	+				-0.0
3,424,839	+				+1.0
3,424,839	+				-0.1
3,424,839	+				-0.0
3,424,839	+				-0.7
3,424,840	-				+1.0
3,424,840	-				-1.7
3,425,060	+		Pf6N2E2_2934	0.26	-0.0
3,425,060	+		Pf6N2E2_2934	0.26	-0.0
3,425,211	-		Pf6N2E2_2934	0.48	-1.8