Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2930

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
3,421,194	+		Pf6N2E2_2928	0.79	+0.4
3,421,238	+		Pf6N2E2_2928	0.84	-1.3
3,421,239	-		Pf6N2E2_2928	0.84	+1.0
3,421,239	-		Pf6N2E2_2928	0.84	+1.0
3,421,239	-		Pf6N2E2_2928	0.84	-0.7
3,421,239	-		Pf6N2E2_2928	0.84	-0.0
3,421,239	-		Pf6N2E2_2928	0.84	-0.9
3,421,239	-		Pf6N2E2_2928	0.84	-1.0
3,421,585	+		Pf6N2E2_2929	0.28	-1.0
3,421,585	+		Pf6N2E2_2929	0.28	-0.0
3,421,585	+		Pf6N2E2_2929	0.28	+1.0
3,421,585	+		Pf6N2E2_2929	0.28	+1.0
3,421,586	-		Pf6N2E2_2929	0.28	+1.0
3,421,684	+		Pf6N2E2_2929	0.41	+1.0
3,421,685	-		Pf6N2E2_2929	0.41	-0.0
3,421,685	-		Pf6N2E2_2929	0.41	-0.7
3,422,101	+				-0.0
3,422,101	+				+0.2
3,422,101	+				-0.6
3,422,101	+				+0.2
3,422,102	-				-0.0
3,422,102	-				-1.6
3,422,108	+				+1.0
3,422,108	+				-0.0
3,422,108	+				-1.0
3,422,109	-				-2.5
3,422,121	-				+1.0
3,422,121	-				-0.0
3,422,513	+		Pf6N2E2_2930	0.80	+1.0
3,422,513	+		Pf6N2E2_2930	0.80	-1.7
3,422,513	+		Pf6N2E2_2930	0.80	+1.0
3,422,513	+		Pf6N2E2_2930	0.80	-0.0
3,422,513	+		Pf6N2E2_2930	0.80	-1.5
3,422,536	-		Pf6N2E2_2930	0.85	-0.0
3,422,620	+				+1.0
3,422,621	-				+1.0
3,422,621	-				+1.0
3,422,621	-				-0.6
3,422,621	-				-0.0
3,422,693	-				-1.8
3,422,747	-				-0.6
3,422,747	-				+1.0
3,422,788	+		Pf6N2E2_2931	0.10	-0.8
3,422,803	+		Pf6N2E2_2931	0.12	-0.0
3,422,803	+		Pf6N2E2_2931	0.12	-0.0
3,422,803	+		Pf6N2E2_2931	0.12	+1.0
3,422,804	-		Pf6N2E2_2931	0.12	-1.9
3,422,804	-		Pf6N2E2_2931	0.12	-0.0
3,422,804	-		Pf6N2E2_2931	0.12	+1.0
3,422,804	-		Pf6N2E2_2931	0.12	-0.0
3,422,804	-		Pf6N2E2_2931	0.12	-1.2
3,422,938	+		Pf6N2E2_2931	0.26	+1.0
3,422,938	+		Pf6N2E2_2931	0.26	+1.0
3,422,939	-		Pf6N2E2_2931	0.26	-1.5
3,422,939	-		Pf6N2E2_2931	0.26	+1.0
3,422,946	-		Pf6N2E2_2931	0.27	-0.6
3,422,998	+		Pf6N2E2_2931	0.32	-0.0
3,422,999	-		Pf6N2E2_2931	0.32	-1.4
3,422,999	-		Pf6N2E2_2931	0.32	-0.4
3,422,999	-		Pf6N2E2_2931	0.32	-0.6
3,423,022	+		Pf6N2E2_2931	0.35	-1.4
3,423,022	+		Pf6N2E2_2931	0.35	+1.0
3,423,023	-		Pf6N2E2_2931	0.35	-1.0
3,423,023	-		Pf6N2E2_2931	0.35	-1.0
3,423,029	+		Pf6N2E2_2931	0.35	-0.0
3,423,082	+		Pf6N2E2_2931	0.41	+1.0
3,423,253	+		Pf6N2E2_2931	0.59	+1.0
3,423,254	-		Pf6N2E2_2931	0.59	-0.0
3,423,258	-		Pf6N2E2_2931	0.59	-0.6
3,423,258	-		Pf6N2E2_2931	0.59	+1.0
3,423,258	-		Pf6N2E2_2931	0.59	-0.7
3,423,258	-		Pf6N2E2_2931	0.59	-0.6
3,423,338	+		Pf6N2E2_2931	0.68	+1.0