Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4698 and Pf6N2E2_4699 are separated by 100 nucleotides Pf6N2E2_4699 and Pf6N2E2_4700 are separated by 234 nucleotides Pf6N2E2_4700 and Pf6N2E2_4701 are separated by 80 nucleotides Pf6N2E2_4701 and Pf6N2E2_4702 are separated by 15 nucleotides
Pf6N2E2_4698 - putative DNA binding protein, at 5,431,205 to 5,431,531
_4698
Pf6N2E2_4699 - FIG00953563: hypothetical protein, at 5,431,632 to 5,432,033
_4699
Pf6N2E2_4700 - Microsomal dipeptidase (EC 3.4.13.19), at 5,432,268 to 5,433,245
_4700
Pf6N2E2_4701 - FIG00953113: hypothetical protein, at 5,433,326 to 5,433,856
_4701
Pf6N2E2_4702 - DgcA Dimethylglycine demethylase subunit A, at 5,433,872 to 5,435,932
_4702
Position (kb) 5432
5433
5434 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.458 kb on + strand, within Pf6N2E2_4698 at 5431.511 kb on - strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.573 kb on + strand at 5431.576 kb on - strand at 5431.677 kb on + strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.711 kb on + strand, within Pf6N2E2_4699 at 5431.711 kb on + strand, within Pf6N2E2_4699 at 5431.712 kb on - strand, within Pf6N2E2_4699 at 5431.712 kb on - strand, within Pf6N2E2_4699 at 5431.913 kb on - strand, within Pf6N2E2_4699 at 5432.127 kb on + strand at 5432.127 kb on + strand at 5432.127 kb on + strand at 5432.128 kb on - strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.204 kb on - strand at 5432.204 kb on - strand at 5432.204 kb on - strand at 5432.204 kb on - strand at 5432.204 kb on - strand at 5432.577 kb on + strand, within Pf6N2E2_4700 at 5432.625 kb on + strand, within Pf6N2E2_4700 at 5432.625 kb on + strand, within Pf6N2E2_4700 at 5432.658 kb on + strand, within Pf6N2E2_4700 at 5432.659 kb on - strand, within Pf6N2E2_4700 at 5432.799 kb on + strand, within Pf6N2E2_4700 at 5432.800 kb on - strand, within Pf6N2E2_4700 at 5432.968 kb on - strand, within Pf6N2E2_4700 at 5433.070 kb on - strand, within Pf6N2E2_4700 at 5433.270 kb on + strand at 5433.298 kb on + strand at 5433.352 kb on + strand at 5433.407 kb on + strand, within Pf6N2E2_4701 at 5433.407 kb on + strand, within Pf6N2E2_4701 at 5433.407 kb on + strand, within Pf6N2E2_4701 at 5433.408 kb on - strand, within Pf6N2E2_4701 at 5433.473 kb on + strand, within Pf6N2E2_4701 at 5433.489 kb on - strand, within Pf6N2E2_4701 at 5433.489 kb on - strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.577 kb on + strand, within Pf6N2E2_4701 at 5433.577 kb on + strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.680 kb on + strand, within Pf6N2E2_4701 at 5433.680 kb on + strand, within Pf6N2E2_4701 at 5433.680 kb on + strand, within Pf6N2E2_4701 at 5433.681 kb on - strand, within Pf6N2E2_4701 at 5433.681 kb on - strand, within Pf6N2E2_4701 at 5433.681 kb on - strand, within Pf6N2E2_4701 at 5433.687 kb on - strand, within Pf6N2E2_4701 at 5433.687 kb on - strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.714 kb on - strand, within Pf6N2E2_4701 at 5433.714 kb on - strand, within Pf6N2E2_4701 at 5433.800 kb on + strand, within Pf6N2E2_4701 at 5433.800 kb on + strand, within Pf6N2E2_4701 at 5433.854 kb on + strand at 5433.854 kb on + strand at 5433.959 kb on + strand at 5433.959 kb on + strand at 5433.959 kb on + strand at 5433.960 kb on - strand at 5434.001 kb on + strand at 5434.001 kb on + strand at 5434.002 kb on - strand at 5434.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 5,431,449 + Pf6N2E2_4698 0.75 -0.8 5,431,449 + Pf6N2E2_4698 0.75 +1.0 5,431,449 + Pf6N2E2_4698 0.75 -0.0 5,431,449 + Pf6N2E2_4698 0.75 -0.7 5,431,449 + Pf6N2E2_4698 0.75 -0.9 5,431,449 + Pf6N2E2_4698 0.75 +1.0 5,431,449 + Pf6N2E2_4698 0.75 -0.4 5,431,449 + Pf6N2E2_4698 0.75 +1.0 5,431,449 + Pf6N2E2_4698 0.75 -0.0 5,431,449 + Pf6N2E2_4698 0.75 -0.2 5,431,449 + Pf6N2E2_4698 0.75 +0.2 5,431,450 - Pf6N2E2_4698 0.75 -0.1 5,431,450 - Pf6N2E2_4698 0.75 -0.0 5,431,450 - Pf6N2E2_4698 0.75 +0.2 5,431,450 - Pf6N2E2_4698 0.75 +1.0 5,431,450 - Pf6N2E2_4698 0.75 +1.0 5,431,458 + Pf6N2E2_4698 0.77 +1.0 5,431,511 - -0.6 5,431,516 + +1.0 5,431,516 + -0.0 5,431,516 + +1.0 5,431,516 + -0.0 5,431,516 + +2.0 5,431,516 + -0.6 5,431,517 - +1.0 5,431,517 - +1.0 5,431,517 - -2.2 5,431,517 - -0.0 5,431,517 - -0.0 5,431,517 - +1.0 5,431,517 - -0.8 5,431,517 - +1.0 5,431,517 - -1.0 5,431,517 - -0.1 5,431,573 + -1.3 5,431,576 - -0.6 5,431,677 + Pf6N2E2_4699 0.11 +1.0 5,431,678 - Pf6N2E2_4699 0.11 -0.0 5,431,678 - Pf6N2E2_4699 0.11 -0.5 5,431,678 - Pf6N2E2_4699 0.11 +1.0 5,431,711 + Pf6N2E2_4699 0.20 -0.2 5,431,711 + Pf6N2E2_4699 0.20 -0.8 5,431,712 - Pf6N2E2_4699 0.20 -1.6 5,431,712 - Pf6N2E2_4699 0.20 -0.6 5,431,913 - Pf6N2E2_4699 0.70 +0.2 5,432,127 + -2.0 5,432,127 + -0.5 5,432,127 + -2.0 5,432,128 - +1.0 5,432,203 + +1.0 5,432,203 + -0.0 5,432,203 + +1.0 5,432,203 + +1.0 5,432,203 + +1.0 5,432,203 + -0.0 5,432,204 - +1.0 5,432,204 - +1.0 5,432,204 - +1.0 5,432,204 - -0.6 5,432,204 - +0.6 5,432,577 + Pf6N2E2_4700 0.32 -1.0 5,432,625 + Pf6N2E2_4700 0.37 -0.6 5,432,625 + Pf6N2E2_4700 0.37 +1.0 5,432,658 + Pf6N2E2_4700 0.40 +1.0 5,432,659 - Pf6N2E2_4700 0.40 -0.6 5,432,799 + Pf6N2E2_4700 0.54 -1.0 5,432,800 - Pf6N2E2_4700 0.54 -0.0 5,432,968 - Pf6N2E2_4700 0.72 +1.0 5,433,070 - Pf6N2E2_4700 0.82 -0.0 5,433,270 + +1.0 5,433,298 + -0.0 5,433,352 + -0.6 5,433,407 + Pf6N2E2_4701 0.15 -0.0 5,433,407 + Pf6N2E2_4701 0.15 -0.5 5,433,407 + Pf6N2E2_4701 0.15 -1.0 5,433,408 - Pf6N2E2_4701 0.15 -0.0 5,433,473 + Pf6N2E2_4701 0.28 -0.0 5,433,489 - Pf6N2E2_4701 0.31 +1.0 5,433,489 - Pf6N2E2_4701 0.31 -0.6 5,433,575 + Pf6N2E2_4701 0.47 +1.0 5,433,575 + Pf6N2E2_4701 0.47 +1.0 5,433,575 + Pf6N2E2_4701 0.47 +1.0 5,433,575 + Pf6N2E2_4701 0.47 +1.0 5,433,575 + Pf6N2E2_4701 0.47 -1.8 5,433,575 + Pf6N2E2_4701 0.47 -0.6 5,433,576 - Pf6N2E2_4701 0.47 -0.6 5,433,576 - Pf6N2E2_4701 0.47 -0.2 5,433,576 - Pf6N2E2_4701 0.47 -1.3 5,433,576 - Pf6N2E2_4701 0.47 -0.2 5,433,577 + Pf6N2E2_4701 0.47 -0.0 5,433,577 + Pf6N2E2_4701 0.47 +1.0 5,433,578 - Pf6N2E2_4701 0.47 -0.5 5,433,578 - Pf6N2E2_4701 0.47 +1.0 5,433,578 - Pf6N2E2_4701 0.47 +1.0 5,433,578 - Pf6N2E2_4701 0.47 -1.0 5,433,578 - Pf6N2E2_4701 0.47 -0.4 5,433,578 - Pf6N2E2_4701 0.47 -0.0 5,433,578 - Pf6N2E2_4701 0.47 -0.0 5,433,680 + Pf6N2E2_4701 0.67 +1.0 5,433,680 + Pf6N2E2_4701 0.67 -0.6 5,433,680 + Pf6N2E2_4701 0.67 -0.0 5,433,681 - Pf6N2E2_4701 0.67 +1.0 5,433,681 - Pf6N2E2_4701 0.67 -0.0 5,433,681 - Pf6N2E2_4701 0.67 -0.2 5,433,687 - Pf6N2E2_4701 0.68 -1.0 5,433,687 - Pf6N2E2_4701 0.68 +1.0 5,433,713 + Pf6N2E2_4701 0.73 -0.0 5,433,713 + Pf6N2E2_4701 0.73 -0.8 5,433,713 + Pf6N2E2_4701 0.73 +1.0 5,433,713 + Pf6N2E2_4701 0.73 -1.6 5,433,713 + Pf6N2E2_4701 0.73 +1.0 5,433,714 - Pf6N2E2_4701 0.73 -1.2 5,433,714 - Pf6N2E2_4701 0.73 -0.6 5,433,800 + Pf6N2E2_4701 0.89 -0.0 5,433,800 + Pf6N2E2_4701 0.89 +1.0 5,433,854 + +1.0 5,433,854 + +0.6 5,433,959 + -1.0 5,433,959 + +1.0 5,433,959 + +2.0 5,433,960 - -0.3 5,434,001 + -1.8 5,434,001 + -0.1 5,434,002 - -0.6 5,434,002 - -0.0
Or see this region's nucleotide sequence