Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4248

Experiment: Ying_sugar7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4247 and Pf6N2E2_4248 overlap by 7 nucleotidesPf6N2E2_4248 and Pf6N2E2_4249 are separated by 153 nucleotides Pf6N2E2_4247 - O-antigen acetylase, at 4,940,633 to 4,941,787 _4247 Pf6N2E2_4248 - SAM-dependent methyltransferases, at 4,941,781 to 4,942,605 _4248 Pf6N2E2_4249 - FIG01055313: hypothetical protein, at 4,942,759 to 4,943,952 _4249 Position (kb) 4941 4942 4943Strain fitness (log2 ratio) -3 -2 -1 0 1at 4940.821 kb on + strand, within Pf6N2E2_4247at 4940.821 kb on + strand, within Pf6N2E2_4247at 4940.821 kb on + strand, within Pf6N2E2_4247at 4940.822 kb on - strand, within Pf6N2E2_4247at 4940.822 kb on - strand, within Pf6N2E2_4247at 4941.068 kb on + strand, within Pf6N2E2_4247at 4941.068 kb on + strand, within Pf6N2E2_4247at 4941.069 kb on - strand, within Pf6N2E2_4247at 4941.069 kb on - strand, within Pf6N2E2_4247at 4941.069 kb on - strand, within Pf6N2E2_4247at 4941.069 kb on - strand, within Pf6N2E2_4247at 4941.074 kb on + strand, within Pf6N2E2_4247at 4941.075 kb on - strand, within Pf6N2E2_4247at 4941.122 kb on + strand, within Pf6N2E2_4247at 4941.122 kb on + strand, within Pf6N2E2_4247at 4941.123 kb on - strand, within Pf6N2E2_4247at 4941.123 kb on - strand, within Pf6N2E2_4247at 4941.123 kb on - strand, within Pf6N2E2_4247at 4941.123 kb on - strand, within Pf6N2E2_4247at 4941.133 kb on - strand, within Pf6N2E2_4247at 4941.161 kb on + strand, within Pf6N2E2_4247at 4941.294 kb on - strand, within Pf6N2E2_4247at 4941.407 kb on + strand, within Pf6N2E2_4247at 4941.407 kb on + strand, within Pf6N2E2_4247at 4941.407 kb on + strand, within Pf6N2E2_4247at 4941.408 kb on - strand, within Pf6N2E2_4247at 4941.408 kb on - strand, within Pf6N2E2_4247at 4941.408 kb on - strand, within Pf6N2E2_4247at 4941.408 kb on - strand, within Pf6N2E2_4247at 4941.461 kb on + strand, within Pf6N2E2_4247at 4941.461 kb on + strand, within Pf6N2E2_4247at 4941.461 kb on + strand, within Pf6N2E2_4247at 4941.461 kb on + strand, within Pf6N2E2_4247at 4941.462 kb on - strand, within Pf6N2E2_4247at 4941.462 kb on - strand, within Pf6N2E2_4247at 4941.473 kb on + strand, within Pf6N2E2_4247at 4941.473 kb on + strand, within Pf6N2E2_4247at 4941.473 kb on + strand, within Pf6N2E2_4247at 4941.474 kb on - strand, within Pf6N2E2_4247at 4941.474 kb on - strand, within Pf6N2E2_4247at 4941.474 kb on - strand, within Pf6N2E2_4247at 4941.474 kb on - strand, within Pf6N2E2_4247at 4941.474 kb on - strand, within Pf6N2E2_4247at 4941.474 kb on - strand, within Pf6N2E2_4247at 4941.474 kb on - strand, within Pf6N2E2_4247at 4941.497 kb on - strand, within Pf6N2E2_4247at 4941.539 kb on + strand, within Pf6N2E2_4247at 4941.539 kb on + strand, within Pf6N2E2_4247at 4941.539 kb on + strand, within Pf6N2E2_4247at 4941.540 kb on - strand, within Pf6N2E2_4247at 4941.540 kb on - strand, within Pf6N2E2_4247at 4941.540 kb on - strand, within Pf6N2E2_4247at 4941.540 kb on - strand, within Pf6N2E2_4247at 4941.540 kb on - strand, within Pf6N2E2_4247at 4941.683 kb on + strandat 4941.683 kb on + strandat 4941.856 kb on + strandat 4941.856 kb on + strandat 4941.856 kb on + strandat 4941.856 kb on + strandat 4941.856 kb on + strandat 4941.856 kb on + strandat 4941.857 kb on - strandat 4941.857 kb on - strandat 4941.857 kb on - strandat 4941.857 kb on - strandat 4941.857 kb on - strandat 4941.857 kb on - strandat 4941.857 kb on - strandat 4941.857 kb on - strandat 4941.857 kb on - strandat 4941.857 kb on - strandat 4942.212 kb on - strand, within Pf6N2E2_4248at 4942.237 kb on + strand, within Pf6N2E2_4248at 4942.237 kb on + strand, within Pf6N2E2_4248at 4942.237 kb on + strand, within Pf6N2E2_4248at 4942.237 kb on + strand, within Pf6N2E2_4248at 4942.238 kb on - strand, within Pf6N2E2_4248at 4942.301 kb on - strand, within Pf6N2E2_4248at 4942.374 kb on + strand, within Pf6N2E2_4248at 4942.374 kb on + strand, within Pf6N2E2_4248at 4942.374 kb on + strand, within Pf6N2E2_4248at 4942.374 kb on + strand, within Pf6N2E2_4248at 4942.375 kb on - strand, within Pf6N2E2_4248at 4942.396 kb on + strand, within Pf6N2E2_4248at 4942.406 kb on - strand, within Pf6N2E2_4248at 4942.406 kb on - strand, within Pf6N2E2_4248at 4942.576 kb on - strandat 4942.576 kb on - strandat 4942.576 kb on - strandat 4942.576 kb on - strandat 4942.585 kb on - strandat 4942.604 kb on - strandat 4942.727 kb on + strandat 4942.742 kb on + strandat 4942.852 kb on + strandat 4942.852 kb on + strandat 4942.852 kb on + strandat 4942.852 kb on + strandat 4942.852 kb on + strandat 4942.852 kb on + strandat 4942.852 kb on + strandat 4942.852 kb on + strandat 4942.852 kb on + strandat 4942.853 kb on - strandat 4942.853 kb on - strandat 4942.853 kb on - strandat 4942.853 kb on - strandat 4943.132 kb on + strand, within Pf6N2E2_4249at 4943.229 kb on + strand, within Pf6N2E2_4249at 4943.229 kb on + strand, within Pf6N2E2_4249at 4943.230 kb on - strand, within Pf6N2E2_4249at 4943.230 kb on - strand, within Pf6N2E2_4249at 4943.230 kb on - strand, within Pf6N2E2_4249at 4943.230 kb on - strand, within Pf6N2E2_4249at 4943.230 kb on - strand, within Pf6N2E2_4249at 4943.232 kb on + strand, within Pf6N2E2_4249at 4943.404 kb on + strand, within Pf6N2E2_4249at 4943.405 kb on - strand, within Pf6N2E2_4249at 4943.405 kb on - strand, within Pf6N2E2_4249

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
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4,940,821 + Pf6N2E2_4247 0.16 +0.1
4,940,821 + Pf6N2E2_4247 0.16 +1.1
4,940,821 + Pf6N2E2_4247 0.16 -2.4
4,940,822 - Pf6N2E2_4247 0.16 +0.6
4,940,822 - Pf6N2E2_4247 0.16 -0.9
4,941,068 + Pf6N2E2_4247 0.38 -0.4
4,941,068 + Pf6N2E2_4247 0.38 -1.2
4,941,069 - Pf6N2E2_4247 0.38 +0.1
4,941,069 - Pf6N2E2_4247 0.38 -0.7
4,941,069 - Pf6N2E2_4247 0.38 -1.7
4,941,069 - Pf6N2E2_4247 0.38 +0.4
4,941,074 + Pf6N2E2_4247 0.38 -1.7
4,941,075 - Pf6N2E2_4247 0.38 +0.1
4,941,122 + Pf6N2E2_4247 0.42 -1.1
4,941,122 + Pf6N2E2_4247 0.42 +1.1
4,941,123 - Pf6N2E2_4247 0.42 -1.0
4,941,123 - Pf6N2E2_4247 0.42 +1.1
4,941,123 - Pf6N2E2_4247 0.42 +1.1
4,941,123 - Pf6N2E2_4247 0.42 -0.9
4,941,133 - Pf6N2E2_4247 0.43 -1.3
4,941,161 + Pf6N2E2_4247 0.46 +0.1
4,941,294 - Pf6N2E2_4247 0.57 +0.1
4,941,407 + Pf6N2E2_4247 0.67 -1.2
4,941,407 + Pf6N2E2_4247 0.67 +1.1
4,941,407 + Pf6N2E2_4247 0.67 -0.3
4,941,408 - Pf6N2E2_4247 0.67 +1.1
4,941,408 - Pf6N2E2_4247 0.67 +1.1
4,941,408 - Pf6N2E2_4247 0.67 +1.1
4,941,408 - Pf6N2E2_4247 0.67 +0.1
4,941,461 + Pf6N2E2_4247 0.72 +1.1
4,941,461 + Pf6N2E2_4247 0.72 +1.1
4,941,461 + Pf6N2E2_4247 0.72 -0.9
4,941,461 + Pf6N2E2_4247 0.72 -2.2
4,941,462 - Pf6N2E2_4247 0.72 +1.1
4,941,462 - Pf6N2E2_4247 0.72 -1.9
4,941,473 + Pf6N2E2_4247 0.73 +1.1
4,941,473 + Pf6N2E2_4247 0.73 +0.1
4,941,473 + Pf6N2E2_4247 0.73 -1.9
4,941,474 - Pf6N2E2_4247 0.73 -0.4
4,941,474 - Pf6N2E2_4247 0.73 +1.1
4,941,474 - Pf6N2E2_4247 0.73 -3.3
4,941,474 - Pf6N2E2_4247 0.73 -1.4
4,941,474 - Pf6N2E2_4247 0.73 -0.9
4,941,474 - Pf6N2E2_4247 0.73 +1.1
4,941,474 - Pf6N2E2_4247 0.73 +0.1
4,941,497 - Pf6N2E2_4247 0.75 +1.1
4,941,539 + Pf6N2E2_4247 0.78 +0.1
4,941,539 + Pf6N2E2_4247 0.78 +0.1
4,941,539 + Pf6N2E2_4247 0.78 -1.7
4,941,540 - Pf6N2E2_4247 0.79 -1.7
4,941,540 - Pf6N2E2_4247 0.79 -0.9
4,941,540 - Pf6N2E2_4247 0.79 +0.1
4,941,540 - Pf6N2E2_4247 0.79 +1.1
4,941,540 - Pf6N2E2_4247 0.79 -1.5
4,941,683 + -0.9
4,941,683 + -1.0
4,941,856 + -0.4
4,941,856 + +1.2
4,941,856 + -0.4
4,941,856 + -0.4
4,941,856 + -0.8
4,941,856 + +1.2
4,941,857 - +1.2
4,941,857 - -1.7
4,941,857 - +1.2
4,941,857 - +1.2
4,941,857 - -3.6
4,941,857 - +1.2
4,941,857 - -0.2
4,941,857 - -0.4
4,941,857 - +1.2
4,941,857 - -1.7
4,942,212 - Pf6N2E2_4248 0.52 -1.2
4,942,237 + Pf6N2E2_4248 0.55 +0.2
4,942,237 + Pf6N2E2_4248 0.55 -2.8
4,942,237 + Pf6N2E2_4248 0.55 -0.4
4,942,237 + Pf6N2E2_4248 0.55 +0.2
4,942,238 - Pf6N2E2_4248 0.55 -0.8
4,942,301 - Pf6N2E2_4248 0.63 -2.5
4,942,374 + Pf6N2E2_4248 0.72 -2.0
4,942,374 + Pf6N2E2_4248 0.72 +1.2
4,942,374 + Pf6N2E2_4248 0.72 -0.8
4,942,374 + Pf6N2E2_4248 0.72 -1.2
4,942,375 - Pf6N2E2_4248 0.72 +1.2
4,942,396 + Pf6N2E2_4248 0.75 -0.4
4,942,406 - Pf6N2E2_4248 0.76 -0.8
4,942,406 - Pf6N2E2_4248 0.76 -0.8
4,942,576 - -0.4
4,942,576 - +0.2
4,942,576 - -0.4
4,942,576 - -2.2
4,942,585 - +1.2
4,942,604 - -0.8
4,942,727 + +0.2
4,942,742 + -0.4
4,942,852 + -1.0
4,942,852 + -1.2
4,942,852 + +0.1
4,942,852 + +1.1
4,942,852 + +0.1
4,942,852 + +1.1
4,942,852 + +1.1
4,942,852 + +0.1
4,942,852 + +1.1
4,942,853 - -1.1
4,942,853 - -0.4
4,942,853 - -0.9
4,942,853 - +0.1
4,943,132 + Pf6N2E2_4249 0.31 +1.1
4,943,229 + Pf6N2E2_4249 0.39 +1.1
4,943,229 + Pf6N2E2_4249 0.39 -1.0
4,943,230 - Pf6N2E2_4249 0.39 +0.1
4,943,230 - Pf6N2E2_4249 0.39 -2.8
4,943,230 - Pf6N2E2_4249 0.39 +1.1
4,943,230 - Pf6N2E2_4249 0.39 -1.9
4,943,230 - Pf6N2E2_4249 0.39 -0.9
4,943,232 + Pf6N2E2_4249 0.40 +0.1
4,943,404 + Pf6N2E2_4249 0.54 +1.1
4,943,405 - Pf6N2E2_4249 0.54 +0.1
4,943,405 - Pf6N2E2_4249 0.54 -1.8

Or see this region's nucleotide sequence