Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2835 and Pf6N2E2_2836 overlap by 1 nucleotides Pf6N2E2_2836 and Pf6N2E2_2837 overlap by 4 nucleotides Pf6N2E2_2837 and Pf6N2E2_2838 are separated by 307 nucleotides
Pf6N2E2_2835 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 3,324,236 to 3,325,438
_2835
Pf6N2E2_2836 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6); Glutaconate CoA-transferase subunit B (EC 2.8.3.12), at 3,325,438 to 3,326,217
_2836
Pf6N2E2_2837 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12), at 3,326,214 to 3,327,074
_2837
Pf6N2E2_2838 - 4-hydroxybenzoate transporter, at 3,327,382 to 3,328,728
_2838
Position (kb)
3326
3327
3328 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.423 kb on + strand at 3325.424 kb on - strand at 3325.424 kb on - strand at 3325.424 kb on - strand at 3325.424 kb on - strand at 3325.425 kb on + strand at 3325.425 kb on + strand at 3325.425 kb on + strand at 3325.425 kb on + strand at 3325.426 kb on - strand at 3325.426 kb on - strand at 3325.426 kb on - strand at 3325.511 kb on - strand at 3325.668 kb on + strand, within Pf6N2E2_2836 at 3325.868 kb on + strand, within Pf6N2E2_2836 at 3325.869 kb on - strand, within Pf6N2E2_2836 at 3325.869 kb on - strand, within Pf6N2E2_2836 at 3326.038 kb on + strand, within Pf6N2E2_2836 at 3326.039 kb on - strand, within Pf6N2E2_2836 at 3326.039 kb on - strand, within Pf6N2E2_2836 at 3326.072 kb on + strand, within Pf6N2E2_2836 at 3326.073 kb on - strand, within Pf6N2E2_2836 at 3326.073 kb on - strand, within Pf6N2E2_2836 at 3326.073 kb on - strand, within Pf6N2E2_2836 at 3326.152 kb on + strand at 3326.152 kb on + strand at 3326.210 kb on + strand at 3326.211 kb on - strand at 3326.211 kb on - strand at 3326.211 kb on - strand at 3326.284 kb on + strand at 3326.284 kb on + strand at 3326.284 kb on + strand at 3326.285 kb on - strand at 3326.285 kb on - strand at 3326.344 kb on + strand, within Pf6N2E2_2837 at 3326.344 kb on + strand, within Pf6N2E2_2837 at 3326.344 kb on + strand, within Pf6N2E2_2837 at 3326.345 kb on - strand, within Pf6N2E2_2837 at 3326.369 kb on - strand, within Pf6N2E2_2837 at 3326.380 kb on + strand, within Pf6N2E2_2837 at 3326.380 kb on + strand, within Pf6N2E2_2837 at 3326.381 kb on - strand, within Pf6N2E2_2837 at 3326.439 kb on + strand, within Pf6N2E2_2837 at 3326.439 kb on + strand, within Pf6N2E2_2837 at 3326.440 kb on - strand, within Pf6N2E2_2837 at 3326.616 kb on + strand, within Pf6N2E2_2837 at 3326.628 kb on + strand, within Pf6N2E2_2837 at 3326.629 kb on - strand, within Pf6N2E2_2837 at 3326.743 kb on + strand, within Pf6N2E2_2837 at 3326.743 kb on + strand, within Pf6N2E2_2837 at 3326.744 kb on - strand, within Pf6N2E2_2837 at 3326.744 kb on - strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.905 kb on + strand, within Pf6N2E2_2837 at 3326.906 kb on - strand, within Pf6N2E2_2837 at 3326.906 kb on - strand, within Pf6N2E2_2837 at 3326.906 kb on - strand, within Pf6N2E2_2837 at 3327.128 kb on - strand at 3327.128 kb on - strand at 3327.150 kb on + strand at 3327.150 kb on + strand at 3327.151 kb on - strand at 3327.328 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.369 kb on + strand at 3327.370 kb on - strand at 3327.370 kb on - strand at 3327.370 kb on - strand at 3327.370 kb on - strand at 3327.725 kb on + strand, within Pf6N2E2_2838 at 3327.890 kb on + strand, within Pf6N2E2_2838 at 3327.890 kb on + strand, within Pf6N2E2_2838 at 3327.914 kb on + strand, within Pf6N2E2_2838 at 3327.915 kb on - strand, within Pf6N2E2_2838 at 3327.915 kb on - strand, within Pf6N2E2_2838 at 3327.947 kb on + strand, within Pf6N2E2_2838 at 3327.947 kb on + strand, within Pf6N2E2_2838 at 3327.948 kb on - strand, within Pf6N2E2_2838 at 3327.948 kb on - strand, within Pf6N2E2_2838 at 3327.948 kb on - strand, within Pf6N2E2_2838
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 3,325,423 + -0.0 3,325,423 + +1.0 3,325,423 + +1.0 3,325,423 + +1.0 3,325,423 + +0.5 3,325,423 + -0.7 3,325,423 + -0.2 3,325,424 - +1.0 3,325,424 - -0.0 3,325,424 - -1.4 3,325,424 - -0.6 3,325,425 + -0.0 3,325,425 + +1.0 3,325,425 + -0.0 3,325,425 + +1.0 3,325,426 - -0.0 3,325,426 - +2.0 3,325,426 - -1.0 3,325,511 - -0.6 3,325,668 + Pf6N2E2_2836 0.29 -1.4 3,325,868 + Pf6N2E2_2836 0.55 +0.2 3,325,869 - Pf6N2E2_2836 0.55 -1.5 3,325,869 - Pf6N2E2_2836 0.55 -0.0 3,326,038 + Pf6N2E2_2836 0.77 -0.6 3,326,039 - Pf6N2E2_2836 0.77 +1.0 3,326,039 - Pf6N2E2_2836 0.77 -0.0 3,326,072 + Pf6N2E2_2836 0.81 -1.0 3,326,073 - Pf6N2E2_2836 0.81 -0.6 3,326,073 - Pf6N2E2_2836 0.81 +1.0 3,326,073 - Pf6N2E2_2836 0.81 +1.0 3,326,152 + +1.0 3,326,152 + -0.6 3,326,210 + +1.0 3,326,211 - +1.0 3,326,211 - +1.0 3,326,211 - +1.0 3,326,284 + +1.0 3,326,284 + +1.0 3,326,284 + +1.0 3,326,285 - -1.6 3,326,285 - +1.0 3,326,344 + Pf6N2E2_2837 0.15 -1.0 3,326,344 + Pf6N2E2_2837 0.15 +1.0 3,326,344 + Pf6N2E2_2837 0.15 -3.9 3,326,345 - Pf6N2E2_2837 0.15 -2.1 3,326,369 - Pf6N2E2_2837 0.18 -0.0 3,326,380 + Pf6N2E2_2837 0.19 +1.0 3,326,380 + Pf6N2E2_2837 0.19 +1.0 3,326,381 - Pf6N2E2_2837 0.19 -1.4 3,326,439 + Pf6N2E2_2837 0.26 -0.9 3,326,439 + Pf6N2E2_2837 0.26 +1.0 3,326,440 - Pf6N2E2_2837 0.26 +1.0 3,326,616 + Pf6N2E2_2837 0.47 +1.0 3,326,628 + Pf6N2E2_2837 0.48 +1.0 3,326,629 - Pf6N2E2_2837 0.48 -0.0 3,326,743 + Pf6N2E2_2837 0.61 +1.0 3,326,743 + Pf6N2E2_2837 0.61 +1.0 3,326,744 - Pf6N2E2_2837 0.62 -0.6 3,326,744 - Pf6N2E2_2837 0.62 -1.0 3,326,905 + Pf6N2E2_2837 0.80 +1.0 3,326,905 + Pf6N2E2_2837 0.80 -1.4 3,326,905 + Pf6N2E2_2837 0.80 -0.0 3,326,905 + Pf6N2E2_2837 0.80 +1.0 3,326,905 + Pf6N2E2_2837 0.80 +1.0 3,326,905 + Pf6N2E2_2837 0.80 +1.0 3,326,905 + Pf6N2E2_2837 0.80 -1.6 3,326,906 - Pf6N2E2_2837 0.80 -0.9 3,326,906 - Pf6N2E2_2837 0.80 +1.0 3,326,906 - Pf6N2E2_2837 0.80 +1.0 3,327,128 - +1.0 3,327,128 - -0.0 3,327,150 + +0.3 3,327,150 + -0.0 3,327,151 - -0.0 3,327,328 + -0.0 3,327,369 + +1.0 3,327,369 + -0.6 3,327,369 + +1.0 3,327,369 + -0.0 3,327,369 + -0.6 3,327,369 + -0.0 3,327,369 + -0.6 3,327,369 + -1.0 3,327,370 - -1.1 3,327,370 - -0.5 3,327,370 - -0.5 3,327,370 - +1.0 3,327,725 + Pf6N2E2_2838 0.25 +1.0 3,327,890 + Pf6N2E2_2838 0.38 -0.8 3,327,890 + Pf6N2E2_2838 0.38 +1.0 3,327,914 + Pf6N2E2_2838 0.39 +1.4 3,327,915 - Pf6N2E2_2838 0.40 -0.0 3,327,915 - Pf6N2E2_2838 0.40 -0.0 3,327,947 + Pf6N2E2_2838 0.42 +1.0 3,327,947 + Pf6N2E2_2838 0.42 -0.0 3,327,948 - Pf6N2E2_2838 0.42 -0.6 3,327,948 - Pf6N2E2_2838 0.42 -0.6 3,327,948 - Pf6N2E2_2838 0.42 -0.0
Or see this region's nucleotide sequence